PLAZA 4.0 Monocots gene overview : AT2G40000

Gene: AT2G40000 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G40000
Transcript Identifier: AT2G40000.1
Gene Type: Coding gene
Location: Chr2 : 16700649-16701956 : negative

Family

Gene family: HOM04M004087
(44 genes in 24 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: ortholog of sugar beet HS1 PRO-1 2

Identifiers

Type	Value
Alias	ATHSPRO2,ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2
symbol	HSPRO2
tid	AT2G40000.1
UniProt	O04203

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006952	IEA	InterPro	defense response
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009816	IMP	UniProt	defense response to bacterium, incompatible interaction	1
GO:0006979	IMP	UniProt	response to oxidative stress	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	UniProt	cytoplasm	1
GO:0005739	ISM	Gene Ontology	mitochondrion	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR009869	Nematode resistance protein-like HSPRO1, N-terminal
IPR009743	Hs1pro-1, C-terminal

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.