Gene: AT2G38560 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G38560
Transcript Identifier
AT2G38560.1
Gene Type
Coding gene
Location
Chr2 : 16134802-16136319 : positive

Family

Gene family
HOM04M002802
(58 genes in 29 species)
specific family

Descriptions

Description
transcript elongation factor IIS
Curated Summary
Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
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Identifiers

Type Value
AliasRDO2,REDUCED DORMANCY 2
symbolTFIIS
tidAT2G38560.1
UniProtQ9ZVH8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 ISS, IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0006354 ISSGene OntologyDNA-templated transcription, elongation1
GO:0006414 IEAGene Ontologytranslational elongation1
GO:0009910 IMPUniProtnegative regulation of flower development1
GO:0010162 IMPUniProtseed dormancy process1
GO:0034243 IMPUniProtregulation of transcription elongation from RNA polymerase II promoter1
GO:0009739 IMPUniProtresponse to gibberellin1
GO:0009845 IMPUniProtseed germination1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0008270 IEAUniProtzinc ion binding1
GO:0003677 ISSGene OntologyDNA binding1
GO:0003700 ISSGene Ontologytranscription factor activity, sequence-specific DNA binding1
GO:0003746 IEAUniProttranslation elongation factor activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISMISS, IEA, UniProtnucleus1 2 3
GO:0005829 RCAGene Ontologycytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003618Transcription elongation factor S-II, central domain
IPR001222Zinc finger, TFIIS-type
IPR017923Transcription factor IIS, N-terminal
IPR035100Transcription elongation factor, IIS-type
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR006289Transcription elongation factor, TFIIS

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.