PLAZA 4.0 Monocots gene overview : AT2G38020

Gene: AT2G38020 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G38020
Transcript Identifier: AT2G38020.1
Gene Type: Coding gene
Location: Chr2 : 15910098-15914190 : negative

Family

Gene family: HOM04M004489
(41 genes in 28 species)
specific family

Descriptions

Description: vacuoleless1 (VCL1)

Curated Summary: necessary for proper vacuole formation and morphogenesis in Arabidopsis

Identifiers

Type	Value
Alias	EMB258,MAN,MANGLED
full_name	VACUOLELESS 1
symbol	VCL1
tid	AT2G38020.1
UniProt	Q93VQ0

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006886	IEA	UniProt	intracellular protein transport	1
GO:0007033	IMP, TAS, IEA,	UniProt	vacuole organization	1
GO:0016197	IBA	UniProt	endosomal transport	1
GO:0032889	IBA	UniProt	regulation of vacuole fusion, non-autophagic	1
GO:0035542	IBA	UniProt	regulation of SNARE complex assembly	1
GO:0045992	IMP	UniProt	negative regulation of embryonic development
GO:0051469	IMP	UniProt	vesicle fusion with vacuole

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0003779	IBA	UniProt	actin binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm
GO:0005765	IBA	UniProt	lysosomal membrane	1
GO:0005768	IBA	UniProt	endosome	1
GO:0030897	IBA	UniProt	HOPS complex	1
GO:0031902	IEA	UniProt	late endosome membrane	1
GO:0009705	IDA	UniProt	plant-type vacuole membrane	1
GO:0043234	IPI	UniProt	protein complex	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011042	Six-bladed beta-propeller, TolB-like
IPR015943	WD40/YVTN repeat-like-containing domain
IPR006926	Vps16, N-terminal
IPR006925	Vps16, C-terminal
IPR016534	Vacuolar protein sorting-associated protein 16
IPR017986	WD40-repeat-containing domain

Mapman id	Description
22.6.5.2	.Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.component VPS16/VCL1

No SignalP domains detected for this gene.