Gene: AT2G38020 (Arabidopsis thaliana)

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Gene Identifier
AT2G38020
Transcript Identifier
AT2G38020.1
Gene Type
Coding gene
Location
Chr2 : 15910098-15914190 : negative

Family

Gene family
HOM04M004489
(41 genes in 28 species)
specific family

Descriptions

Description
vacuoleless1 (VCL1)
Curated Summary
necessary for proper vacuole formation and morphogenesis in Arabidopsis
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Identifiers

Type Value
AliasEMB258,MAN,MANGLED
full_nameVACUOLELESS 1
symbolVCL1
tidAT2G38020.1
UniProtQ93VQ0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006886 IEAUniProtintracellular protein transport1
GO:0007033 IMP, TAS, IEA, UniProtvacuole organization1
GO:0016197 IBAUniProtendosomal transport1
GO:0032889 IBAUniProtregulation of vacuole fusion, non-autophagic1
GO:0035542 IBAUniProtregulation of SNARE complex assembly1
GO:0045992 IMPUniProtnegative regulation of embryonic development
GO:0051469 IMPUniProtvesicle fusion with vacuole

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0003779 IBAUniProtactin binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAInterProcytoplasm
GO:0005765 IBAUniProtlysosomal membrane1
GO:0005768 IBAUniProtendosome1
GO:0030897 IBAUniProtHOPS complex1
GO:0031902 IEAUniProtlate endosome membrane1
GO:0009705 IDAUniProtplant-type vacuole membrane1
GO:0043234 IPIUniProtprotein complex1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011042Six-bladed beta-propeller, TolB-like
IPR015943WD40/YVTN repeat-like-containing domain
IPR006926Vps16, N-terminal
IPR006925Vps16, C-terminal
IPR016534Vacuolar protein sorting-associated protein 16
IPR017986WD40-repeat-containing domain

Mapman id Description
22.6.5.2.Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.component VPS16/VCL1
No SignalP domains detected for this gene.