Gene: AT2G32950 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G32950
Transcript Identifier
AT2G32950.1
Gene Type
Coding gene
Location
Chr2 : 13978000-13983282 : positive

Family

Gene family
HOM04M000692
(187 genes in 29 species)
specific family
Subfamily
ORTHO04M000791
(143 genes in 29 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
Curated Summary
Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.
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Identifiers

Type Value
AliasATCOP1,ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1,DET340,DEETIOLATED MUTANT 340,EMB168,EMBRYO DEFECTIVE 168,FUS1,FUSCA 1
full_nameCONSTITUTIVE PHOTOMORPHOGENIC 1
symbolCOP1
tidAT2G32950.1
UniProtP43254

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009585 IEAUniProtred, far-red light phototransduction1
GO:0016567 IEAGene Ontologyprotein ubiquitination1
GO:0009640 IGI, TAS, UniProtphotomorphogenesis1 2
GO:0009647 TASUniProtskotomorphogenesis1
GO:0010119 IMP, IGI, UniProtregulation of stomatal movement1 2
GO:0046283 IMPUniProtanthocyanin-containing compound metabolic process1
GO:0048573 IMPUniProtphotoperiodism, flowering1
GO:0006281 IMPUniProtDNA repair1
GO:0009649 IMPUniProtentrainment of circadian clock1
GO:0009641 IMPUniProtshade avoidance1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0008270 IEAGene Ontologyzinc ion binding1
GO:0004842 IDA, IMP, UniProtubiquitin-protein transferase activity1 2 3
GO:0042802 IPIUniProtidentical protein binding1
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IMP, ISM, UniProtnucleus1 2 3
GO:0005737 IEAUniProtcytoplasm1
GO:0000152 TASUniProtnuclear ubiquitin ligase complex1
GO:0080008 ISSUniProtCul4-RING E3 ubiquitin ligase complex1
GO:0016604 IDAUniProtnuclear body1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR015943WD40/YVTN repeat-like-containing domain
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR017907Zinc finger, RING-type, conserved site
IPR017986WD40-repeat-containing domain

Mapman id Description
18.4.16.Protein modification.phosphorylation.protein kinase (PEK)
19.2.2.8.3.4.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.3.1.External stimuli response.light.red/far red light.CUL4-DDB1 ubiquitination complex.COP1-SPA substrate adaptor subcomplex.component COP1
No SignalP domains detected for this gene.