PLAZA 4.0 Monocots gene overview : AT2G29525

Gene: AT2G29525 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G29525
Transcript Identifier: AT2G29525.1
Gene Type: Coding gene
Location: Chr2 : 12638533-12640661 : positive

Family

Gene family: HOM04M001990
(78 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: Inositol phosphorylceramide synthase 3

Curated Summary: Inositol phosphorylceramide synthase

Identifiers

Type	Value
full_name	Arabidopsis Inositol phosphorylceramide synthase 3
symbol	AtIPCS3
tid	AT2G29525.1
UniProt	Q56Y01

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0030148	IDA	Gene Ontology	sphingolipid biosynthetic process	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0045140	IDA, IMP	Gene Ontology	inositol phosphoceramide synthase activity	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	ISM	Gene Ontology	mitochondrion	1
GO:0005802	IBA	Gene Ontology	trans-Golgi network	1
GO:0016021	IEA	UniProt	integral component of membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR025749	Sphingomyelin synthase-like domain

Mapman id	Description
5.4.13.1	.Lipid metabolism.sphingolipid biosynthesis.glycosylinositol phosphorylceramide (GIPC) biosynthesis.inositol phosphorylceramide synthase (IPCS)

No SignalP domains detected for this gene.