Gene: AT2G27840 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G27840
Transcript Identifier
AT2G27840.3
Gene Type
Coding gene
Location
Chr2 : 11862085-11863707 : positive

Family

Gene family
HOM04M001820
(84 genes in 26 species)
specific family

Descriptions

Description
histone deacetylase-related / HD-like protein
Curated Summary
Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39
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Identifiers

Type Value
symbolHDT4
tidAT2G27840.3
UniProtQ9M4T3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0016569 IEAUniProtcovalent chromatin modification1
GO:0030422 IGIGene Ontologyproduction of siRNA involved in RNA interference1
GO:0010162 IEPUniProtseed dormancy process1
GO:0009414 IEAPLAZA Tree-based Orthologyresponse to water deprivationAT5G03740
GO:0009944 IEAPLAZA Tree-based Orthologypolarity specification of adaxial/abaxial axisAT3G44750
GO:0045892 IEAPLAZA Tree-based Orthologynegative regulation of transcription, DNA-templatedAT5G03740
GO:0009651 IEAPLAZA Tree-based Orthologyresponse to salt stressAT5G03740
GO:0009737 IEAPLAZA Tree-based Orthologyresponse to abscisic acidAT5G03740
GO:0009294 IEAPLAZA Tree-based OrthologyDNA mediated transformationAT3G44750

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016787 IEAUniProthydrolase activity1
GO:0004407 ISSGene Ontologyhistone deacetylase activity1
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT5G03740
GO:0003676 IEAPLAZA Homology (enrichment)nucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005730 IDAUniProtnucleolus1
GO:0005774 IEAPLAZA Tree-based Orthologyvacuolar membraneAT5G22650
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT5G22650
GO:0005739 IEAPLAZA Tree-based OrthologymitochondrionAT5G22650
GO:0005618 IEAPLAZA Tree-based Orthologycell wallAT5G22650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
12.3.2.2.Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase
No SignalP domains detected for this gene.