PLAZA 4.0 Monocots gene overview : AT2G22330

Gene: AT2G22330 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G22330
Transcript Identifier: AT2G22330.2
Gene Type: Coding gene
Location: Chr2 : 9488532-9490983 : positive

Family

Gene family: HOM04M000004
(4272 genes in 29 species)
specific family
Subfamily: ORTHO04M001385
(99 genes in 16 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: cytochrome P450, family 79, subfamily B, polypeptide 3

Curated Summary: Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.

Identifiers

Type	Value
full_name	cytochrome P450, family 79, subfamily B, polypeptide 3
symbol	CYP79B3
tid	AT2G22330.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Gene Ontology	oxidation-reduction process	1
GO:0006569	IDA	UniProt	tryptophan catabolic process	1
GO:0009684	IMP	UniProt	indoleacetic acid biosynthetic process	1
GO:0010120	TAS	UniProt	camalexin biosynthetic process	1
GO:0019761	TAS	UniProt	glucosinolate biosynthetic process	1
GO:0009611	IEP	UniProt	response to wounding	1
GO:0042742	IMP	UniProt	defense response to bacterium	1
GO:0052544	IMP	UniProt	defense response by callose deposition in cell wall	1
GO:0006952	IMP	UniProt	defense response	1
GO:0010112	IEP	UniProt	regulation of systemic acquired resistance	1
GO:0002229	IGI	Gene Ontology	defense response to oomycetes	1
GO:0009617	IMP	UniProt	response to bacterium	1
GO:0009682	IMP	UniProt	induced systemic resistance	1
GO:0009625	IEP	UniProt	response to insect	1
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT4G39950

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding	1
GO:0016705	IEA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding	1
GO:0016709	IBA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0004497	IEA	UniProt	monooxygenase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISM, NAS	Gene Ontology	chloroplast	1 2
GO:0016020	IBA	UniProt	membrane	1
GO:0016021	IEA	UniProt	integral component of membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
9.5.1.6.2	.Secondary metabolism.glucosinolates.glucosinolate biosynthesis.benzenic and indolic core structure.tryptophan N-monooxygenase

No SignalP domains detected for this gene.