PLAZA 4.0 Monocots gene overview : AT2G18790

Gene: AT2G18790 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G18790
Transcript Identifier: AT2G18790.1
Gene Type: Coding gene
Location: Chr2 : 8140079-8144151 : positive

Family

Gene family: HOM04M001168
(122 genes in 27 species)
specific family
Subfamily: ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description: phytochrome B

Identifiers

Type	Value
Alias	HY3,OOP1,OUT OF PHASE 1
symbol	PHYB
tid	AT2G18790.1
UniProt	P14713

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, ISS,	UniProt	regulation of transcription, DNA-templated	1
GO:0009584	IEA	UniProt	detection of visible light	1
GO:0018298	IEA	UniProt	protein-chromophore linkage	1
GO:0007165	IEA	InterPro	signal transduction
GO:0009585	IEA	UniProt	red, far-red light phototransduction	1
GO:0017006	IEA	UniProt	protein-tetrapyrrole linkage
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009409	IMP	UniProt	response to cold	1
GO:0009649	IMP	UniProt	entrainment of circadian clock	1
GO:0009638	IMP	UniProt	phototropism	1
GO:0009630	IMP	UniProt	gravitropism	1
GO:0009687	IMP	UniProt	abscisic acid metabolic process	1
GO:0010029	IMP	UniProt	regulation of seed germination	1
GO:0010161	IMP	UniProt	red light signaling pathway	1
GO:0010617	IMP	UniProt	circadian regulation of calcium ion oscillation	1
GO:0009867	IMP	UniProt	jasmonic acid mediated signaling pathway	1
GO:0031347	IMP	UniProt	regulation of defense response	1
GO:0010148	IMP	UniProt	transpiration	1
GO:0010374	IMP	UniProt	stomatal complex development	1
GO:0015979	IMP	UniProt	photosynthesis	1
GO:0006325	IMP	UniProt	chromatin organization	1
GO:0009640	IMP	UniProt	photomorphogenesis	1
GO:0010218	IMP	UniProt	response to far red light	1
GO:0017012	IDA	UniProt	protein-phytochromobilin linkage	1 2
GO:2000028	IMP	UniProt	regulation of photoperiodism, flowering	1 2
GO:0010244	IDA	UniProt	response to low fluence blue light stimulus by blue low-fluence system	1 2
GO:0009266	IMP	UniProt	response to temperature stimulus	1 2
GO:0045892	IDA	UniProt	negative regulation of transcription, DNA-templated	1 2
GO:0010202	IMP	UniProt	response to low fluence red light stimulus	1
GO:0007131	IEA	PLAZA Tree-based Orthology	reciprocal meiotic recombination	LOC_Os03g54084
GO:0046685	IEA	PLAZA Tree-based Orthology	response to arsenic-containing substance	AT1G09570
GO:0010017	IEA	PLAZA Integrative Orthology	red or far-red light signaling pathway	AT4G16250
GO:0000724	IEA	PLAZA Tree-based Orthology	double-strand break repair via homologous recombination	LOC_Os03g54084
GO:0010203	IEA	PLAZA Tree-based Orthology	response to very low fluence red light stimulus	AT1G09570
GO:0017148	IEA	PLAZA Tree-based Orthology	negative regulation of translation	AT1G09570
GO:0010201	IEA	PLAZA Tree-based Orthology	response to continuous far red light stimulus by the high-irradiance response system	AT1G09570

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0000155	IEA	UniProt	phosphorelay sensor kinase activity	1
GO:0009881	IEA	UniProt	photoreceptor activity
GO:0042803	IDA, IEA,	UniProt	protein homodimerization activity	1 2
GO:0004673	ISS	Gene Ontology	protein histidine kinase activity	1
GO:0004871	ISS	Gene Ontology	signal transducer activity	1
GO:0008020	ISS	Gene Ontology	G-protein coupled photoreceptor activity	1
GO:0009883	IMP	UniProt	red or far-red light photoreceptor activity	1
GO:0042802	IPI	UniProt	identical protein binding	1
GO:0031516	IDA	UniProt	far-red light photoreceptor activity	1
GO:0031517	IDA	UniProt	red light photoreceptor activity	1
GO:0043565	IDA	UniProt	sequence-specific DNA binding	1 2
GO:1990841	IDA	UniProt	promoter-specific chromatin binding	1 2
GO:0003729	IEA	PLAZA Tree-based Orthology	mRNA binding	AT1G09570
GO:0004672	IEA	PLAZA Tree-based Orthology	protein kinase activity	AT1G09570

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISM	Gene Ontology	plasma membrane	1
GO:0016607	IEA	UniProt	nuclear speck	1
GO:0005634	IDA	UniProt	nucleus	1
GO:0005829	IDA	UniProt	cytosol	1
GO:0016604	IDA	UniProt	nuclear body	1
GO:0005622	IEA	UniProt	intracellular
GO:0005737	IEA	PLAZA Tree-based Orthology	cytoplasm	AT1G09570

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000014	PAS domain
IPR003594	Histidine kinase-like ATPase, C-terminal domain
IPR029016	GAF domain-like
IPR013515	Phytochrome, central region
IPR003018	GAF domain
IPR013654	PAS fold-2
IPR013767	PAS fold
IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR012129	Phytochrome A/B/C/D/E
IPR001294	Phytochrome
IPR013516	Phytochrome chromophore binding site
IPR005467	Histidine kinase domain
IPR016132	Phytochrome chromophore attachment domain

Mapman id	Description
26.1.1.1	.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
26.4.1.2	.External stimuli response.temperature.sensing and signalling.temperature sensor protein (PHY-B)

No SignalP domains detected for this gene.