Gene: AT2G18790 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G18790
Transcript Identifier
AT2G18790.1
Gene Type
Coding gene
Location
Chr2 : 8140079-8144151 : positive

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description
phytochrome B
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Identifiers

Type Value
AliasHY3,OOP1,OUT OF PHASE 1
symbolPHYB
tidAT2G18790.1
UniProtP14713

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEA, ISS, UniProtregulation of transcription, DNA-templated1
GO:0009584 IEAUniProtdetection of visible light1
GO:0018298 IEAUniProtprotein-chromophore linkage1
GO:0007165 IEAInterProsignal transduction
GO:0009585 IEAUniProtred, far-red light phototransduction1
GO:0017006 IEAUniProtprotein-tetrapyrrole linkage
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0009409 IMPUniProtresponse to cold1
GO:0009649 IMPUniProtentrainment of circadian clock1
GO:0009638 IMPUniProtphototropism1
GO:0009630 IMPUniProtgravitropism1
GO:0009687 IMPUniProtabscisic acid metabolic process1
GO:0010029 IMPUniProtregulation of seed germination1
GO:0010161 IMPUniProtred light signaling pathway1
GO:0010617 IMPUniProtcircadian regulation of calcium ion oscillation1
GO:0009867 IMPUniProtjasmonic acid mediated signaling pathway1
GO:0031347 IMPUniProtregulation of defense response1
GO:0010148 IMPUniProttranspiration1
GO:0010374 IMPUniProtstomatal complex development1
GO:0015979 IMPUniProtphotosynthesis1
GO:0006325 IMPUniProtchromatin organization1
GO:0009640 IMPUniProtphotomorphogenesis1
GO:0010218 IMPUniProtresponse to far red light1
GO:0017012 IDAUniProtprotein-phytochromobilin linkage1 2
GO:2000028 IMPUniProtregulation of photoperiodism, flowering1 2
GO:0010244 IDAUniProtresponse to low fluence blue light stimulus by blue low-fluence system1 2
GO:0009266 IMPUniProtresponse to temperature stimulus1 2
GO:0045892 IDAUniProtnegative regulation of transcription, DNA-templated1 2
GO:0010202 IMPUniProtresponse to low fluence red light stimulus1
GO:0007131 IEAPLAZA Tree-based Orthologyreciprocal meiotic recombinationLOC_Os03g54084
GO:0046685 IEAPLAZA Tree-based Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010017 IEAPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0000724 IEAPLAZA Tree-based Orthologydouble-strand break repair via homologous recombinationLOC_Os03g54084
GO:0010203 IEAPLAZA Tree-based Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0017148 IEAPLAZA Tree-based Orthologynegative regulation of translationAT1G09570
GO:0010201 IEAPLAZA Tree-based Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0000155 IEAUniProtphosphorelay sensor kinase activity1
GO:0009881 IEAUniProtphotoreceptor activity
GO:0042803 IDA, IEA, UniProtprotein homodimerization activity1 2
GO:0004673 ISSGene Ontologyprotein histidine kinase activity1
GO:0004871 ISSGene Ontologysignal transducer activity1
GO:0008020 ISSGene OntologyG-protein coupled photoreceptor activity1
GO:0009883 IMPUniProtred or far-red light photoreceptor activity1
GO:0042802 IPIUniProtidentical protein binding1
GO:0031516 IDAUniProtfar-red light photoreceptor activity1
GO:0031517 IDAUniProtred light photoreceptor activity1
GO:0043565 IDAUniProtsequence-specific DNA binding1 2
GO:1990841 IDAUniProtpromoter-specific chromatin binding1 2
GO:0003729 IEAPLAZA Tree-based OrthologymRNA bindingAT1G09570
GO:0004672 IEAPLAZA Tree-based Orthologyprotein kinase activityAT1G09570

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886 ISMGene Ontologyplasma membrane1
GO:0016607 IEAUniProtnuclear speck1
GO:0005634 IDAUniProtnucleus1
GO:0005829 IDAUniProtcytosol1
GO:0016604 IDAUniProtnuclear body1
GO:0005622 IEAUniProtintracellular
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT1G09570

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR013515Phytochrome, central region
IPR003018GAF domain
IPR013654PAS fold-2
IPR013767PAS fold
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR012129Phytochrome A/B/C/D/E
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR005467Histidine kinase domain
IPR016132Phytochrome chromophore attachment domain

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
26.4.1.2.External stimuli response.temperature.sensing and signalling.temperature sensor protein (PHY-B)
No SignalP domains detected for this gene.