PLAZA 4.0 Monocots gene overview : AT2G18060

Gene: AT2G18060 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G18060
Transcript Identifier: AT2G18060.1
Gene Type: Coding gene
Location: Chr2 : 7848399-7850303 : negative

Family

Gene family: HOM04M000014
(2446 genes in 27 species)
specific family
Subfamily: ORTHO04M000022
(1115 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: vascular related NAC-domain protein 1

Curated Summary: Encodes a NAC-domain transcription factor that is expressed in developing vessels and protoxylem. Along with other members of this family, VND1 appears to regulate the development of genes required for secondary cell wall biosynthesis.

Identifiers

Type	Value
Alias	ANAC037,Arabidopsis NAC domain containing protein 37
symbol	VND1
tid	AT2G18060.1
UniProt	Q9SL41

Toolbox

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...the colinearity of this gene with other genomes.
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...the orthologs using the Integrative Orthology Viewer.
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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, IMP, TAS,	UniProt	regulation of transcription, DNA-templated	1 2 3
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0007275	IEA	UniProt	multicellular organism development	1
GO:0071555	IEA	UniProt	cell wall organization	1
GO:1990110	IEP	UniProt	callus formation	1 2
GO:0010200	IEP	UniProt	response to chitin	1
GO:0048759	IMP	UniProt	xylem vessel member cell differentiation	1 2
GO:1901348	IMP	UniProt	positive regulation of secondary cell wall biogenesis	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	UniProt	DNA binding
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0044212	IPI	UniProt	transcription regulatory region DNA binding	1
GO:0043565	IPI	UniProt	sequence-specific DNA binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003441	NAC domain

Mapman id	Description
15.5.17	.RNA biosynthesis.transcriptional regulation.transcription factor (NAC)

No SignalP domains detected for this gene.