Gene: AT2G15400 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G15400
Transcript Identifier
AT2G15400.1
Gene Type
Coding gene
Location
Chr2 : 6713022-6714386 : positive

Family

Gene family
HOM04M004079
(44 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
DNA-directed RNA polymerase family protein
Curated Summary
Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.
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Identifiers

Type Value
symbolNRPE3B
tidAT2G15400.1
UniProtQ39212

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEA, ISS, UniProttranscription, DNA-templated1 2
GO:0006366 IEAUniProttranscription from RNA polymerase II promoter
GO:0010374 IEAPLAZA Integrative Orthologystomatal complex developmentAT2G15430
GO:0010375 IEAPLAZA Integrative Orthologystomatal complex patterningAT2G15430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003899 IEA, ISS, UniProtDNA-directed 5'-3' RNA polymerase activity1 2
GO:0046983 IEAUniProtprotein dimerization activity1
GO:0003677 IEA, ISS, UniProtDNA binding1 2
GO:0001055 IBAGene OntologyRNA polymerase II activity1
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0000418 IDAUniProtDNA-directed RNA polymerase IV complex1
GO:0000419 IDA, IPI, UniProtDNA-directed RNA polymerase V complex1 2
GO:0005665 IPIGene OntologyDNA-directed RNA polymerase II, core complex1
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT2G15430
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT2G15430

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011262DNA-directed RNA polymerase, insert domain
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain

Mapman id Description
15.1.6.1.RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 3
No SignalP domains detected for this gene.