PLAZA 4.0 Monocots gene overview : AT2G05170

Gene: AT2G05170 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G05170
Transcript Identifier: AT2G05170.1
Gene Type: Coding gene
Location: Chr2 : 1870020-1873278 : positive

Family

Gene family: HOM04M006206
(33 genes in 28 species)
specific family

Descriptions

Description: vacuolar protein sorting 11

Curated Summary: Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.

Identifiers

Type	Value
Alias	ATVPS11,vacuolar protein sorting 11
symbol	VPS11
tid	AT2G05170.1
UniProt	Q9SJ40

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006886	IEA	UniProt	intracellular protein transport	1
GO:0016192	IEA	InterPro	vesicle-mediated transport
GO:0006904	IBA	UniProt	vesicle docking involved in exocytosis	1
GO:0007032	IBA	UniProt	endosome organization	1
GO:0007040	IBA	UniProt	lysosome organization	1
GO:0035542	IBA	UniProt	regulation of SNARE complex assembly	1
GO:0007033	TAS	UniProt	vacuole organization	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	InterPro	binding
GO:0005215	ISS	Gene Ontology	transporter activity	1
GO:0008270	IEA	Gene Ontology	zinc ion binding	1
GO:0030674	IBA	UniProt	protein binding, bridging	1
GO:0046872	IEA	UniProt	metal ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005768	IBA	UniProt	endosome	1
GO:0030897	IBA	UniProt	HOPS complex	1
GO:0031902	IEA	UniProt	late endosome membrane	1
GO:0009705	IDA	UniProt	plant-type vacuole membrane	1
GO:0043234	IPI	UniProt	protein complex	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR015943	WD40/YVTN repeat-like-containing domain
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR011990	Tetratricopeptide-like helical domain
IPR016528	Vacuolar protein sorting-associated protein 11
IPR024763	Vacuolar protein sorting protein 11, C-terminal
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
IPR017986	WD40-repeat-containing domain
IPR016024	Armadillo-type fold

Mapman id	Description
22.6.5.1	.Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.component VPS11

No SignalP domains detected for this gene.