Gene: AT2G05100 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G05100
Transcript Identifier
AT2G05100.1
Gene Type
Coding gene
Location
Chr2 : 1823449-1824331 : negative

Family

Gene family
HOM04M000121
(715 genes in 29 species)
specific family
Subfamily
ORTHO04M000163
(372 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
photosystem II light harvesting complex protein 2.1
Curated Summary
Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
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Identifiers

Type Value
AliasLHCB2,LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2
full_namephotosystem II light harvesting complex gene 2.1
symbolLHCB2.1
tidAT2G05100.1
UniProtQ9SHR7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009765 IEAUniProtphotosynthesis, light harvesting
GO:0015979 ISSGene Ontologyphotosynthesis1
GO:0018298 IEAUniProtprotein-chromophore linkage1
GO:0009637 IEPUniProtresponse to blue light1
GO:0010114 IDA, IEP, IMP, UniProtresponse to red light1 2 3 4 5
GO:0010218 IDA, IEP, UniProtresponse to far red light1 2 3
GO:0009645 IEPUniProtresponse to low light intensity stimulus1 2
GO:0009269 IEPUniProtresponse to desiccation1 2
GO:0009409 IEPUniProtresponse to cold1 2
GO:0009644 IEPUniProtresponse to high light intensity1 2
GO:0009416 IDAUniProtresponse to light stimulus1 2
GO:0009768 IDA, IMP, UniProtphotosynthesis, light harvesting in photosystem I1 2 3 4
GO:0009769 IDA, IMP, UniProtphotosynthesis, light harvesting in photosystem II1 2 3 4
GO:0071215 ISSUniProtcellular response to abscisic acid stimulus
GO:1903428 ISSUniProtpositive regulation of reactive oxygen species biosynthetic process
GO:0090333 ISSUniProtregulation of stomatal closure
GO:0030104 ISSUniProtwater homeostasis

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016168 IBA, IEA, ISS, UniProtchlorophyll binding1 2
GO:0031409 IBAUniProtpigment binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0019904 IPIUniProtprotein domain specific binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020 IDA, IEA, UniProtmembrane1
GO:0009507 IDA, ISM, UniProtchloroplast1 2
GO:0016021 IEAUniProtintegral component of membrane1
GO:0030076 ISSGene Ontologylight-harvesting complex1
GO:0009941 IDAUniProtchloroplast envelope1
GO:0009535 IDA, IEA, UniProtchloroplast thylakoid membrane1
GO:0010287 IDAUniProtplastoglobule1
GO:0009579 IDAUniProtthylakoid1
GO:0005794 RCAGene OntologyGolgi apparatus1
GO:0009517 IDA, IMP, UniProtPSII associated light-harvesting complex II1 2 3 4
GO:0009522 IDA, IEA, UniProtphotosystem I1 2
GO:0009523 IDA, IEA, UniProtphotosystem II1 2
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT2G05070
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT2G05070

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023329Chlorophyll a/b binding protein domain
IPR001344Chlorophyll A-B binding protein, plant
IPR022796Chlorophyll A-B binding protein

Mapman id Description
1.1.1.1.1Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb1/2/3
No SignalP domains detected for this gene.