Gene: AT1G75520 (Arabidopsis thaliana)

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Gene Identifier
AT1G75520
Transcript Identifier
AT1G75520.1
Gene Type
Coding gene
Location
Chr1 : 28351779-28353179 : negative

Family

Gene family
HOM04M000833
(160 genes in 27 species)
specific family
Subfamily
ORTHO04M000717
(154 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
SHI-related sequence 5
Curated Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
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Identifiers

Type Value
symbolSRS5
tidAT1G75520.1
UniProtQ9LQZ5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007275 IEAUniProtmulticellular organism development1
GO:0009734 IEAUniProtauxin-activated signaling pathway1
GO:0009851 IEAUniProtauxin biosynthetic process1
GO:0048467 IGIGene Ontologygynoecium development1
GO:0048480 IEAPLAZA Tree-based Orthologystigma developmentAT3G51060
GO:0045893 IEAPLAZA Tree-based Orthologypositive regulation of transcription, DNA-templatedAT3G51060
GO:0009739 IEAPLAZA Tree-based Orthologyresponse to gibberellinAT5G66350
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT5G12330
GO:0009938 IEAPLAZA Tree-based Orthologynegative regulation of gibberellic acid mediated signaling pathwayAT5G66350
GO:0009733 IEAPLAZA Tree-based Orthologyresponse to auxinAT5G12330
GO:0009740 IEAPLAZA Tree-based Orthologygibberellic acid mediated signaling pathwayAT5G66350
GO:0048479 IEAPLAZA Tree-based Orthologystyle developmentAT3G51060
GO:0010051 IEAPLAZA Tree-based Orthologyxylem and phloem pattern formationAT3G51060
GO:0009299 IEAPLAZA Integrative OrthologymRNA transcriptionAT1G19790
GO:0010252 IEAPLAZA Tree-based Orthologyauxin homeostasisAT3G51060

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0003677 IEAUniProtDNA binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0046982 IEAPLAZA Tree-based Orthologyprotein heterodimerization activityAT3G51060
GO:0003700 IEAPLAZA Tree-based Orthologytranscription factor activity, sequence-specific DNA bindingAT5G66350
GO:0042803 IEAPLAZA Tree-based Orthologyprotein homodimerization activityAT5G12330

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISS, ISMUniProtnucleus1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain
IPR007818SHI protein family
IPR006511SHORT INTERNODES, C-terminal
IPR006510Zinc finger, lateral root primordium type 1

Mapman id Description
15.5.47.RNA biosynthesis.transcriptional regulation.transcription factor (SRS)
No SignalP domains detected for this gene.