PLAZA 4.0 Monocots gene overview : AT1G74080

Gene: AT1G74080 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G74080
Transcript Identifier: AT1G74080.1
Gene Type: Coding gene
Location: Chr1 : 27855972-27857432 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: myb domain protein 122

Curated Summary: Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).

Identifiers

Type	Value
Alias	ATMYB122,MYB DOMAIN PROTEIN 122
symbol	MYB122
tid	AT1G74080.1
UniProt	Q9C9C8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0009625	IEP	UniProt	response to insect	1
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT5G60890
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT5G60890
GO:0010438	IEA	PLAZA Integrative Orthology	cellular response to sulfur starvation	AT5G60890
GO:0000162	IEA	PLAZA Integrative Orthology	tryptophan biosynthetic process	AT5G60890
GO:0009759	IEA	PLAZA Integrative Orthology	indole glucosinolate biosynthetic process	AT5G60890
GO:0002213	IEA	PLAZA Integrative Orthology	defense response to insect	AT5G60890

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, IEA	Gene Ontology	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0016301	IEA	PLAZA Integrative Orthology	kinase activity	AT5G60890

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2
GO:0009506	IDA	UniProt	plasmodesma	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.