PLAZA 4.0 Monocots gene overview : AT1G69295

Gene: AT1G69295 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G69295
Transcript Identifier: AT1G69295.2
Gene Type: Coding gene
Location: Chr1 : 26050492-26052594 : negative

Family

Gene family: HOM04M000019
(2055 genes in 28 species)
specific family
Subfamily: ORTHO04M000093
(534 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: plasmodesmata callose-binding protein 4

Curated Summary: Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.

Identifiers

Type	Value
symbol	PDCB4
tid	AT1G69295.2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008150	ND	Gene Ontology	biological_process	1
GO:0009451	IBA	UniProt	RNA modification
GO:0005975	IEA	PLAZA Homology (enrichment)	carbohydrate metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004553	IBA	UniProt	hydrolase activity, hydrolyzing O-glycosyl compounds	1
GO:0030247	ISS, IBA,	UniProt	polysaccharide binding	1 2
GO:0001872	ISS	UniProt	(1->3)-beta-D-glucan binding	1
GO:0004519	IBA	UniProt	endonuclease activity
GO:0003723	IBA	UniProt	RNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	IDA, ISM,	UniProt	plasma membrane	1 2
GO:0046658	IBA	UniProt	anchored component of plasma membrane	1
GO:0031225	TAS	UniProt	anchored component of membrane	1
GO:0009506	IDA	UniProt	plasmodesma	1
GO:0043231	IBA	UniProt	intracellular membrane-bounded organelle

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012946	X8 domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.