PLAZA 4.0 Monocots gene overview : AT1G58260

Gene: AT1G58260 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G58260
Transcript Identifier: AT1G58260.1
Gene Type: Coding gene
Location: Chr1 : 21605752-21607995 : positive

Family

Gene family: HOM04M000004
(4272 genes in 29 species)
specific family
Subfamily: ORTHO04M001385
(99 genes in 16 species)
specific family
Duplication type: Tandem duplicate

Descriptions

Description: cytochrome p450 79c2

Curated Summary: member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes.

Identifiers

Type	Value
Alias	CYP79C3P
symbol	CYP79C2
tid	AT1G58260.1
UniProt	Q9LQB7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Gene Ontology	oxidation-reduction process	1
GO:0009684	IBA	UniProt	indoleacetic acid biosynthetic process	1
GO:0019761	IBA	UniProt	glucosinolate biosynthetic process	1
GO:0098542	IBA	UniProt	defense response to other organism	1
GO:0009625	IEA	PLAZA Integrative Orthology	response to insect	AT1G16410

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding	1
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding	1
GO:0016709	IBA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1
GO:0019825	ISS	Gene Ontology	oxygen binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISM	Gene Ontology	chloroplast	1
GO:0016020	IBA	UniProt	membrane	1
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT1G16410

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
50.1.13	.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen

No SignalP domains detected for this gene.