PLAZA 4.0 Monocots gene overview : AT1G56590

Gene: AT1G56590 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G56590
Transcript Identifier: AT1G56590.1
Gene Type: Coding gene
Location: Chr1 : 21202250-21204697 : negative

Family

Gene family: HOM04M000635
(198 genes in 29 species)
specific family
Subfamily: ORTHO04M005394
(41 genes in 28 species)
specific family

Descriptions

Description: Clathrin adaptor complexes medium subunit family protein

Curated Summary: Involved in vesicle trafficking between the trans -Golgi network and vacuoles.

Identifiers

Type	Value
Alias	AP3M,adaptor protein-3 mu-adaptin
full_name	ZIG SUPPRESSOR 4
symbol	ZIP4
tid	AT1G56590.1
UniProt	F4I562

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006886	IEA, ISS,	UniProt	intracellular protein transport	1
GO:0016192	IEA	UniProt	vesicle-mediated transport
GO:0006810	IEA	InterPro	transport
GO:0006623	IGI	Gene Ontology	protein targeting to vacuole	1
GO:0009630	IMP	UniProt	gravitropism	1
GO:0007143	IMP	UniProt	female meiotic nuclear division
GO:0007140	IMP	UniProt	male meiotic nuclear division
GO:0000712	IMP	UniProt	resolution of meiotic recombination intermediates

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005385	IEA	UniProt	zinc ion transmembrane transporter activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0030131	IEA	UniProt	clathrin adaptor complex
GO:0030125	ISS	Gene Ontology	clathrin vesicle coat	1
GO:0009507	IDA	UniProt	chloroplast
GO:0005694	IEA	UniProt	chromosome
GO:0005634	IEA	UniProt	nucleus
GO:0030659	IEA	UniProt	cytoplasmic vesicle membrane
GO:0005794	IEA	UniProt	Golgi apparatus
GO:0009535	IEA	UniProt	chloroplast thylakoid membrane
GO:0016021	IEA	UniProt	integral component of membrane
GO:0005886	IBA	UniProt	plasma membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR028565	Mu homology domain
IPR001392	Clathrin adaptor, mu subunit
IPR018240	Clathrin adaptor, mu subunit, conserved site
IPR011012	Longin-like domain

Mapman id	Description
22.1.5.3	.Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-3 Golgi to vacuole cargo adaptor complex.medium subunit mu (AP3M)

No SignalP domains detected for this gene.