PLAZA 4.0 Monocots gene overview : AT1G53940

Gene: AT1G53940 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G53940
Transcript Identifier: AT1G53940.1
Gene Type: Coding gene
Location: Chr1 : 20143279-20144453 : positive

Family

Gene family: HOM04M000030
(1774 genes in 27 species)
specific family
Subfamily: ORTHO04M001016
(122 genes in 11 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: GDSL-motif lipase 2

Curated Summary: Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance

Identifiers

Type	Value
symbol	GLIP2
tid	AT1G53940.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006629	IDA, IEA,	UniProt	lipid metabolic process	1
GO:0009734	IEA	UniProt	auxin-activated signaling pathway	1
GO:0016042	IEA	UniProt	lipid catabolic process	1
GO:0009723	IEP	UniProt	response to ethylene	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:0009814	IMP	UniProt	defense response, incompatible interaction	1
GO:0010930	IMP	UniProt	negative regulation of auxin mediated signaling pathway	1
GO:0042742	IMP	Gene Ontology	defense response to bacterium	1
GO:0009817	IEA	PLAZA Integrative Orthology	defense response to fungus, incompatible interaction	AT5G40990
GO:0009627	IEA	PLAZA Integrative Orthology	systemic acquired resistance	AT5G40990
GO:0009871	IEA	PLAZA Integrative Orthology	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	AT5G40990
GO:0009620	IEA	PLAZA Integrative Orthology	response to fungus	AT5G40990
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT5G40990
GO:0009866	IEA	PLAZA Integrative Orthology	induced systemic resistance, ethylene mediated signaling pathway	AT5G40990

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016788	IEA	InterPro	hydrolase activity, acting on ester bonds
GO:0016298	IDA, ISS, IEA,	UniProt	lipase activity	1 2
GO:0052689	ISS	Gene Ontology	carboxylic ester hydrolase activity	1
GO:0004064	IDA	Gene Ontology	arylesterase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	IEA, ISM,	UniProt	extracellular region	1 2
GO:0005615	IEA	PLAZA Integrative Orthology	extracellular space	AT5G40990

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001087	GDSL lipase/esterase
IPR008265	Lipase, GDSL, active site

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.