PLAZA 4.0 Monocots gene overview : AT1G49100

Gene: AT1G49100 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G49100
Transcript Identifier: AT1G49100.1
Gene Type: Coding gene
Location: Chr1 : 18166147-18170105 : negative

Family

Gene family: HOM04M000077
(1050 genes in 27 species)
specific family
Subfamily: ORTHO04M000084
(563 genes in 25 species)
specific family

Descriptions

Description: Leucine-rich repeat protein kinase family protein

Identifiers

Type	Value
tid	AT1G49100.1
UniProt	F4I065

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0016310	ISS	Gene Ontology	phosphorylation	1
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT1G51800
GO:0002239	IEA	PLAZA Integrative Orthology	response to oomycetes	AT1G51800
GO:1900426	IEA	PLAZA Integrative Orthology	positive regulation of defense response to bacterium	AT1G51800
GO:0009788	IEA	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT1G51800
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT1G51890
GO:0009960	IEA	PLAZA Integrative Orthology	endosperm development	AT3G46330
GO:0009620	IEA	PLAZA Integrative Orthology	response to fungus	AT1G51800
GO:0009793	IEA	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT3G46330
GO:1902289	IEA	PLAZA Integrative Orthology	negative regulation of defense response to oomycetes	AT1G51800
GO:1900150	IEA	PLAZA Integrative Orthology	regulation of defense response to fungus	AT1G51800

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	ISS	Gene Ontology	kinase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISM	Gene Ontology	plasma membrane	1
GO:0090406	IEA	PLAZA Integrative Orthology	pollen tube	AT1G51800
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT1G51850
GO:0005777	IEA	PLAZA Integrative Orthology	peroxisome	AT3G46410

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001611	Leucine-rich repeat
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR024788	Malectin-like carbohydrate-binding domain
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
50.2.7	.Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group

No SignalP domains detected for this gene.