PLAZA 4.0 Monocots gene overview : AT1G34670

Gene: AT1G34670 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G34670
Transcript Identifier: AT1G34670.1
Gene Type: Coding gene
Location: Chr1 : 12709128-12710423 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 93

Curated Summary: Member of the R2R3 factor gene family.

Identifiers

Type	Value
Alias	AtMYB93,myb domain protein 93
symbol	MYB93
tid	AT1G34670.1
UniProt	Q9S9Z2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0009733	IEP	UniProt	response to auxin	1
GO:0009737	IEP	UniProt	response to abscisic acid	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0071365	IEP	UniProt	cellular response to auxin stimulus	1 2
GO:1901332	IMP	UniProt	negative regulation of lateral root development	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS	UniProt	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.