PLAZA 4.0 Monocots gene overview : AT1G25340

Gene: AT1G25340 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G25340
Transcript Identifier: AT1G25340.3
Gene Type: Coding gene
Location: Chr1 : 8885210-8886629 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: myb domain protein 116

Curated Summary: putative transcription factor (MYB116)

Identifiers

Type	Value
Alias	AtMYB116,myb domain protein 116
symbol	MYB116
tid	AT1G25340.3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0010015	IEA	PLAZA Integrative Orthology	root morphogenesis	AT1G68320
GO:0016036	IEA	PLAZA Integrative Orthology	cellular response to phosphate starvation	AT1G68320
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G68320
GO:0009686	IEA	PLAZA Integrative Orthology	gibberellin biosynthetic process	AT1G68320
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT1G68320
GO:0010373	IEA	PLAZA Integrative Orthology	negative regulation of gibberellin biosynthetic process	AT1G68320
GO:0055062	IEA	PLAZA Integrative Orthology	phosphate ion homeostasis	AT1G68320

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS,	UniProt	DNA binding	1 2
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.