PLAZA 4.0 Monocots gene overview : AT1G21730

Gene: AT1G21730 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G21730
Transcript Identifier: AT1G21730.1
Gene Type: Coding gene
Location: Chr1 : 7630365-7636247 : positive

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M001052
(119 genes in 28 species)
specific family

Descriptions

Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein

Identifiers

Type	Value
tid	AT1G21730.1
UniProt	Q8W5R6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IBA, IEA	Gene Ontology	microtubule-based movement	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IBA, ISS, IEA	Gene Ontology	microtubule motor activity	1 2
GO:0005524	IEA	Gene Ontology	ATP binding	1
GO:0008017	IEA	Gene Ontology	microtubule binding	1
GO:0016887	IBA	Gene Ontology	ATPase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IEA, ISM	Gene Ontology	mitochondrion	1 2
GO:0005871	IBA	Gene Ontology	kinesin complex	1
GO:0005874	IEA	Gene Ontology	microtubule	1
GO:0005886	IDA	Gene Ontology	plasma membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin motor domain
IPR019821	Kinesin motor domain, conserved site
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
20.1.3.6	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-7)

No SignalP domains detected for this gene.