PLAZA 4.0 Monocots gene overview : AT1G17420

Gene: AT1G17420 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G17420
Transcript Identifier: AT1G17420.1
Gene Type: Coding gene
Location: Chr1 : 5977512-5981384 : positive

Family

Gene family: HOM04M000201
(461 genes in 28 species)
specific family
Subfamily: ORTHO04M000157
(384 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: lipoxygenase 3

Curated Summary: LOX3 encode a Lipoxygenase. Lipoxygenases (LOXs) catalyze the oxygenation of fatty acids (FAs).

Identifiers

Type	Value
Alias	ATLOX3,Arabidopsis thaliana lipoxygenase 3
symbol	LOX3
tid	AT1G17420.1
UniProt	Q9LNR3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0031408	IEA	UniProt	oxylipin biosynthetic process	1
GO:0009611	IEP, TAS,	UniProt	response to wounding	1 2
GO:0009644	IEP	UniProt	response to high light intensity	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:0009620	IEP	UniProt	response to fungus	1
GO:0009555	IGI	UniProt	pollen development	1
GO:0009901	IGI	UniProt	anther dehiscence	1
GO:0048653	IGI	UniProt	anther development	1
GO:0080086	IGI	UniProt	stamen filament development	1
GO:0034440	IDA	UniProt	lipid oxidation	1
GO:0009695	TAS	Gene Ontology	jasmonic acid biosynthetic process	1
GO:0006952	TAS	Gene Ontology	defense response	1
GO:0040007	TAS	Gene Ontology	growth	1
GO:0009617	IEP	UniProt	response to bacterium
GO:0010193	IEP	UniProt	response to ozone

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0016702	IEA	InterPro	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	IEA	UniProt	metal ion binding	1
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0016165	IDA	UniProt	linoleate 13S-lipoxygenase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IEA, ISM,	UniProt	chloroplast	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001024	PLAT/LH2 domain
IPR027433	Lipoxygenase, domain 3
IPR000907	Lipoxygenase
IPR013819	Lipoxygenase, C-terminal
IPR001246	Lipoxygenase, plant
IPR020834	Lipoxygenase, conserved site
IPR020833	Lipoxygenase, iron binding site

Mapman id	Description
11.7.1.2	.Phytohormone action.jasmonic acid.biosynthesis.13-lipoxygenase

No SignalP domains detected for this gene.