PLAZA 4.0 Monocots gene overview : AT1G16410

Gene: AT1G16410 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G16410
Transcript Identifier: AT1G16410.1
Gene Type: Coding gene
Location: Chr1 : 5608862-5611118 : positive

Family

Gene family: HOM04M000004
(4272 genes in 29 species)
specific family
Subfamily: ORTHO04M001385
(99 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: cytochrome p450 79f1

Curated Summary: member of CYP79F

Identifiers

Type	Value
Alias	BUS1,BUSHY 1,SPS1,SUPERSHOOT 1
symbol	CYP79F1
tid	AT1G16410.1
UniProt	Q949U1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Gene Ontology	oxidation-reduction process	1
GO:0009684	IBA	UniProt	indoleacetic acid biosynthetic process	1
GO:0098542	IBA	UniProt	defense response to other organism	1
GO:0019761	IMP	UniProt	glucosinolate biosynthetic process	1
GO:0009625	IEP	UniProt	response to insect	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding	1
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding	1
GO:0016709	IDA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005789	IEA	UniProt	endoplasmic reticulum membrane	1
GO:0009507	ISM	Gene Ontology	chloroplast	1
GO:0016020	IBA	UniProt	membrane	1
GO:0016021	IEA	UniProt	integral component of membrane	1
GO:0005783	IDA	UniProt	endoplasmic reticulum	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
9.5.1.5.1	.Secondary metabolism.glucosinolates.glucosinolate biosynthesis.aliphatic core structure.oligohomomethionine N-hydroxylase

No SignalP domains detected for this gene.