Gene: AT1G10390 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G10390
Transcript Identifier
AT1G10390.2
Gene Type
Coding gene
Location
Chr1 : 3407265-3412045 : negative

Family

Gene family
HOM04M001313
(111 genes in 29 species)
specific family
Subfamily
ORTHO04M002930
(62 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Nucleoporin autopeptidase
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Identifiers

Type Value
tidAT1G10390.2
UniProtQ8RY25

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006810 IEAInterProtransport
GO:0000973 IBAGene Ontologyposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery1
GO:0006606 IBAGene Ontologyprotein import into nucleus1
GO:0034398 IBAGene Ontologytelomere tethering at nuclear periphery1
GO:0006406 IMPGene OntologymRNA export from nucleus1 2
GO:1902446 IMPGene Ontologyregulation of shade avoidance1 2

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723 IBAGene OntologyRNA binding1
GO:0005215 ISSGene Ontologytransporter activity1
GO:0005487 IBAGene Ontologynucleocytoplasmic transporter activity1
GO:0008139 IBAGene Ontologynuclear localization sequence binding1
GO:0017056 IBAGene Ontologystructural constituent of nuclear pore1
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005643 IEAInterPronuclear pore
GO:0005634 IDA, ISMGene Ontologynucleus1 2 3
GO:0044614 IBAGene Ontologynuclear pore cytoplasmic filaments1
GO:0005635 IDAGene Ontologynuclear envelope1
GO:0005737 IDAGene Ontologycytoplasm1 2
GO:0031965 IDAGene Ontologynuclear membrane1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007230Peptidase S59, nucleoporin

Mapman id Description
23.5.1.1.6.1.Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP98)
No SignalP domains detected for this gene.