Gene: AT1G09570 (Arabidopsis thaliana)

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Gene Identifier
AT1G09570
Transcript Identifier
AT1G09570.1
Gene Type
Coding gene
Location
Chr1 : 3095498-3099216 : negative

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description
phytochrome A
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Identifiers

Type Value
AliasFHY2,FAR RED ELONGATED HYPOCOTYL 2,FRE1,FAR RED ELONGATED 1,HY8,ELONGATED HYPOCOTYL 8
symbolPHYA
tidAT1G09570.1
UniProtP14712

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEA, ISS, UniProtregulation of transcription, DNA-templated1 2
GO:0009584 IEAUniProtdetection of visible light1
GO:0018298 IEAUniProtprotein-chromophore linkage1
GO:0009585 IEAUniProtred, far-red light phototransduction1
GO:0017006 IEAUniProtprotein-tetrapyrrole linkage1
GO:0007165 IEAInterProsignal transduction
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0009638 IMPUniProtphototropism1
GO:0010218 IDA, ISS, UniProtresponse to far red light1 2 3 4
GO:0009630 IMPUniProtgravitropism1
GO:0010161 IMPUniProtred light signaling pathway1
GO:0046685 IMPUniProtresponse to arsenic-containing substance1
GO:0009640 IMPUniProtphotomorphogenesis1
GO:0017148 IMPUniProtnegative regulation of translation1
GO:0010201 IMPUniProtresponse to continuous far red light stimulus by the high-irradiance response system1
GO:0010203 IMPUniProtresponse to very low fluence red light stimulus1
GO:0010202 IEAPLAZA Tree-based Orthologyresponse to low fluence red light stimulusAT2G18790
GO:2000028 IEAPLAZA Tree-based Orthologyregulation of photoperiodism, floweringAT2G18790
GO:0010244 IEAPLAZA Tree-based Orthologyresponse to low fluence blue light stimulus by blue low-fluence systemAT2G18790
GO:0031347 IEAPLAZA Tree-based Orthologyregulation of defense responseAT2G18790
GO:0010029 IEAPLAZA Tree-based Orthologyregulation of seed germinationAT2G18790
GO:0015979 IEAPLAZA Tree-based OrthologyphotosynthesisAT2G18790
GO:0017012 IEAPLAZA Tree-based Orthologyprotein-phytochromobilin linkageAT2G18790
GO:0010148 IEAPLAZA Tree-based OrthologytranspirationAT2G18790
GO:0010017 IEAPLAZA Tree-based Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010617 IEAPLAZA Tree-based Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0045892 IEAPLAZA Tree-based Orthologynegative regulation of transcription, DNA-templatedAT2G18790
GO:0009649 IEAPLAZA Tree-based Orthologyentrainment of circadian clockAT2G18790
GO:0009409 IEAPLAZA Tree-based Orthologyresponse to coldAT2G18790
GO:0009867 IEAPLAZA Tree-based Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0006325 IEAPLAZA Tree-based Orthologychromatin organizationAT2G18790
GO:0009687 IEAPLAZA Tree-based Orthologyabscisic acid metabolic processAT2G18790
GO:0000724 IEAPLAZA Tree-based Orthologydouble-strand break repair via homologous recombinationLOC_Os03g54084
GO:0009266 IEAPLAZA Tree-based Orthologyresponse to temperature stimulusAT2G18790
GO:0007131 IEAPLAZA Tree-based Orthologyreciprocal meiotic recombinationLOC_Os03g54084
GO:0010374 IEAPLAZA Tree-based Orthologystomatal complex developmentAT2G18790

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0009881 IEAUniProtphotoreceptor activity
GO:0042803 IEAUniProtprotein homodimerization activity1
GO:0000155 IEAUniProtphosphorelay sensor kinase activity1
GO:0004673 ISSGene Ontologyprotein histidine kinase activity1
GO:0004871 ISSGene Ontologysignal transducer activity1
GO:0008020 ISSGene OntologyG-protein coupled photoreceptor activity1
GO:0042802 IPIUniProtidentical protein binding1
GO:0004672 IDAUniProtprotein kinase activity1 2
GO:0031516 IMPUniProtfar-red light photoreceptor activity1
GO:0003729 IDAUniProtmRNA binding1 2
GO:0009883 TASUniProtred or far-red light photoreceptor activity1
GO:1990841 IEAPLAZA Tree-based Orthologypromoter-specific chromatin bindingAT2G18790
GO:0031517 IEAPLAZA Tree-based Orthologyred light photoreceptor activityAT2G18790
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT2G18790

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016607 IEAUniProtnuclear speck1
GO:0005634 IDAUniProtnucleus1
GO:0005737 IDAUniProtcytoplasm1
GO:0016604 IDAUniProtnuclear body1
GO:0005622 IEAUniProtintracellular
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR013515Phytochrome, central region
IPR003018GAF domain
IPR013767PAS fold
IPR013654PAS fold-2
IPR012129Phytochrome A/B/C/D/E
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR005467Histidine kinase domain
IPR016132Phytochrome chromophore attachment domain
IPR001610PAC motif
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
No SignalP domains detected for this gene.