PLAZA 4.0 Monocots gene overview : AT1G09570

Gene: AT1G09570 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G09570
Transcript Identifier: AT1G09570.1
Gene Type: Coding gene
Location: Chr1 : 3095498-3099216 : negative

Family

Gene family: HOM04M001168
(122 genes in 27 species)
specific family
Subfamily: ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description: phytochrome A

Identifiers

Type	Value
Alias	FHY2,FAR RED ELONGATED HYPOCOTYL 2,FRE1,FAR RED ELONGATED 1,HY8,ELONGATED HYPOCOTYL 8
symbol	PHYA
tid	AT1G09570.1
UniProt	P14712

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, ISS,	UniProt	regulation of transcription, DNA-templated	1 2
GO:0009584	IEA	UniProt	detection of visible light	1
GO:0018298	IEA	UniProt	protein-chromophore linkage	1
GO:0009585	IEA	UniProt	red, far-red light phototransduction	1
GO:0017006	IEA	UniProt	protein-tetrapyrrole linkage	1
GO:0007165	IEA	InterPro	signal transduction
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009638	IMP	UniProt	phototropism	1
GO:0010218	IDA, ISS,	UniProt	response to far red light	1 2 3 4
GO:0009630	IMP	UniProt	gravitropism	1
GO:0010161	IMP	UniProt	red light signaling pathway	1
GO:0046685	IMP	UniProt	response to arsenic-containing substance	1
GO:0009640	IMP	UniProt	photomorphogenesis	1
GO:0017148	IMP	UniProt	negative regulation of translation	1
GO:0010201	IMP	UniProt	response to continuous far red light stimulus by the high-irradiance response system	1
GO:0010203	IMP	UniProt	response to very low fluence red light stimulus	1
GO:0010202	IEA	PLAZA Tree-based Orthology	response to low fluence red light stimulus	AT2G18790
GO:2000028	IEA	PLAZA Tree-based Orthology	regulation of photoperiodism, flowering	AT2G18790
GO:0010244	IEA	PLAZA Tree-based Orthology	response to low fluence blue light stimulus by blue low-fluence system	AT2G18790
GO:0031347	IEA	PLAZA Tree-based Orthology	regulation of defense response	AT2G18790
GO:0010029	IEA	PLAZA Tree-based Orthology	regulation of seed germination	AT2G18790
GO:0015979	IEA	PLAZA Tree-based Orthology	photosynthesis	AT2G18790
GO:0017012	IEA	PLAZA Tree-based Orthology	protein-phytochromobilin linkage	AT2G18790
GO:0010148	IEA	PLAZA Tree-based Orthology	transpiration	AT2G18790
GO:0010017	IEA	PLAZA Tree-based Orthology	red or far-red light signaling pathway	AT4G16250
GO:0010617	IEA	PLAZA Tree-based Orthology	circadian regulation of calcium ion oscillation	AT2G18790
GO:0045892	IEA	PLAZA Tree-based Orthology	negative regulation of transcription, DNA-templated	AT2G18790
GO:0009649	IEA	PLAZA Tree-based Orthology	entrainment of circadian clock	AT2G18790
GO:0009409	IEA	PLAZA Tree-based Orthology	response to cold	AT2G18790
GO:0009867	IEA	PLAZA Tree-based Orthology	jasmonic acid mediated signaling pathway	AT2G18790
GO:0006325	IEA	PLAZA Tree-based Orthology	chromatin organization	AT2G18790
GO:0009687	IEA	PLAZA Tree-based Orthology	abscisic acid metabolic process	AT2G18790
GO:0000724	IEA	PLAZA Tree-based Orthology	double-strand break repair via homologous recombination	LOC_Os03g54084
GO:0009266	IEA	PLAZA Tree-based Orthology	response to temperature stimulus	AT2G18790
GO:0007131	IEA	PLAZA Tree-based Orthology	reciprocal meiotic recombination	LOC_Os03g54084
GO:0010374	IEA	PLAZA Tree-based Orthology	stomatal complex development	AT2G18790

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0009881	IEA	UniProt	photoreceptor activity
GO:0042803	IEA	UniProt	protein homodimerization activity	1
GO:0000155	IEA	UniProt	phosphorelay sensor kinase activity	1
GO:0004673	ISS	Gene Ontology	protein histidine kinase activity	1
GO:0004871	ISS	Gene Ontology	signal transducer activity	1
GO:0008020	ISS	Gene Ontology	G-protein coupled photoreceptor activity	1
GO:0042802	IPI	UniProt	identical protein binding	1
GO:0004672	IDA	UniProt	protein kinase activity	1 2
GO:0031516	IMP	UniProt	far-red light photoreceptor activity	1
GO:0003729	IDA	UniProt	mRNA binding	1 2
GO:0009883	TAS	UniProt	red or far-red light photoreceptor activity	1
GO:1990841	IEA	PLAZA Tree-based Orthology	promoter-specific chromatin binding	AT2G18790
GO:0031517	IEA	PLAZA Tree-based Orthology	red light photoreceptor activity	AT2G18790
GO:0043565	IEA	PLAZA Tree-based Orthology	sequence-specific DNA binding	AT2G18790

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016607	IEA	UniProt	nuclear speck	1
GO:0005634	IDA	UniProt	nucleus	1
GO:0005737	IDA	UniProt	cytoplasm	1
GO:0016604	IDA	UniProt	nuclear body	1
GO:0005622	IEA	UniProt	intracellular
GO:0005829	IEA	PLAZA Tree-based Orthology	cytosol	AT2G18790

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000014	PAS domain
IPR003594	Histidine kinase-like ATPase, C-terminal domain
IPR029016	GAF domain-like
IPR013515	Phytochrome, central region
IPR003018	GAF domain
IPR013767	PAS fold
IPR013654	PAS fold-2
IPR012129	Phytochrome A/B/C/D/E
IPR001294	Phytochrome
IPR013516	Phytochrome chromophore binding site
IPR005467	Histidine kinase domain
IPR016132	Phytochrome chromophore attachment domain
IPR001610	PAC motif
IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain

Mapman id	Description
26.1.1.1	.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)

No SignalP domains detected for this gene.