PLAZA 4.0 Monocots gene overview : AT1G06160

Gene: AT1G06160 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G06160
Transcript Identifier: AT1G06160.1
Gene Type: Coding gene
Location: Chr1 : 1883046-1883780 : positive

Family

Gene family: HOM04M000008
(3579 genes in 29 species)
specific family
Subfamily: ORTHO04M000003
(3095 genes in 29 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: octadecanoid-responsive AP2/ERF 59

Curated Summary: encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.

Identifiers

Type	Value
full_name	octadecanoid-responsive Arabidopsis AP2/ERF 59
symbol	ORA59
tid	AT1G06160.1
UniProt	Q9LND1

Toolbox

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...the local gene organization for homologous genes.
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...the orthologs using the Integrative Orthology Viewer.
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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, TAS	Gene Ontology	regulation of transcription, DNA-templated	1 2
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009723	IEP	UniProt	response to ethylene	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:0009861	IMP	UniProt	jasmonic acid and ethylene-dependent systemic resistance	1
GO:0009873	TAS	UniProt	ethylene-activated signaling pathway	1
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT2G31230

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	ISS, TASIEA,	UniProt	transcription factor activity, sequence-specific DNA binding	1 2
GO:0003677	IEA, TAS,	UniProt	DNA binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM,	UniProt	nucleus	1 2
GO:0005622	TAS	Gene Ontology	intracellular	1
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT2G31230

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001471	AP2/ERF domain
IPR016177	DNA-binding domain

Mapman id	Description
15.5.7.1	.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)

No SignalP domains detected for this gene.