Gene: AT1G05900 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G05900
Transcript Identifier
AT1G05900.2
Gene Type
Coding gene
Location
Chr1 : 1786896-1789502 : positive

Family

Gene family
HOM04M005219
(37 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
endonuclease III 2
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Identifiers

Type Value
AliasATNTH2
symbolNTH2
tidAT1G05900.2
UniProtB9DFZ0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006284 IDA, ISS, IEA, UniProtbase-excision repair1 2
GO:0006281 IEAInterProDNA repair
GO:0006285 IBA, IEA, UniProtbase-excision repair, AP site formation1
GO:0006296 IBAUniProtnucleotide-excision repair, DNA incision, 5'-to lesion1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003906 IDA, IEA, UniProtDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104 IDA, IEA, UniProtDNA N-glycosylase activity1
GO:0003677 IEAUniProtDNA binding
GO:0051539 IEAUniProt4 iron, 4 sulfur cluster binding
GO:0003824 IEAInterProcatalytic activity
GO:0000703 IBAUniProtoxidized pyrimidine nucleobase lesion DNA N-glycosylase activity1
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IBA, ISM, IEA, UniProtnucleus1 2
GO:0005739 ISMGene Ontologymitochondrion1
GO:0042644 IDAUniProtchloroplast nucleoid1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003265HhH-GPD domain
IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
IPR030841Endonuclease III-like protein 1
IPR000445Helix-hairpin-helix motif
IPR004036Endonuclease III-like, conserved site-2
IPR003651Endonuclease III-like, iron-sulphur cluster loop motif
IPR003583Helix-hairpin-helix DNA-binding motif, class 1
IPR011257DNA glycosylase

Mapman id Description
14.5.11.DNA damage response.base excision repair (BER).bifunctional glycosylase-lyase and endonuclease (NTH)
No SignalP domains detected for this gene.