Gene: AT1G05260 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G05260
Transcript Identifier
AT1G05260.1
Gene Type
Coding gene
Location
Chr1 : 1529827-1531271 : positive

Family

Gene family
HOM04M000007
(3591 genes in 27 species)
specific family
Subfamily
ORTHO04M000005
(2399 genes in 27 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
Peroxidase superfamily protein
Curated Summary
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
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Identifiers

Type Value
AliasRCI3A
full_nameRARE COLD INDUCIBLE GENE 3
symbolRCI3
tidAT1G05260.1
UniProtO23044

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0042744 IEAUniProthydrogen peroxide catabolic process1
GO:0006979 IEAUniProtresponse to oxidative stress1
GO:0055114 IEAGene Ontologyoxidation-reduction process1
GO:0009664 IBAUniProtplant-type cell wall organization1
GO:0009269 IMPUniProtresponse to desiccation1
GO:0009409 IEPUniProtresponse to cold1
GO:0042538 IMPUniProthyperosmotic salinity response1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004601 IDA, ISSIEA, UniProtperoxidase activity1 2
GO:0020037 IEAUniProtheme binding1
GO:0046872 IEAUniProtmetal ion binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576 IEA, ISM, UniProtextracellular region1 2
GO:0009505 IBAUniProtplant-type cell wall1
GO:0005783 ISSUniProtendoplasmic reticulum1
GO:0009506 IBAUniProtplasmodesma
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT3G21770
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT3G21770
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G21770

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033905Secretory peroxidase
IPR002016Haem peroxidase, plant/fungal/bacterial
IPR000823Plant peroxidase
IPR019793Peroxidases heam-ligand binding site
IPR019794Peroxidase, active site
IPR010255Haem peroxidase

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.