Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00008.1.g10950.1.am.mkhcNo description available.Zjn_sc00008.1+View
Zjn_sc00001.1.g06630.1.sm.mkhcNo description available.Zjn_sc00001.1+View


Orthologs (inter-species colinear regions)

Ananas comosus

Gene id Description Chromosome Strand Multiplicon
Aco014389Secretory carrier-associated membrane proteinLG07-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G61250secretory carrier 3 (SC3)%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1)%3B Has 696 Blast hits to 694 proteins in 106 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 383%3B Fungi - 14%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink). Encodes a putative secretory carrier membrane protein (SC3). secretory carrier 3Chr1+View
AT1G11180Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: integral to membrane%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1)%3B Has 667 Blast hits to 665 proteins in 105 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 372%3B Fungi - 14%3B Plants - 226%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink). Secretory carrier membrane protein (SCAMP) family proteinChr1+View
AT2G20840Secretory carrier membrane protein (SCAMP) family protein Secretory carrier membrane protein (SCAMP) family protein%3B FUNCTIONS IN: transmembrane transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273)%3B BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G03550.1)%3B Has 686 Blast hits to 684 proteins in 104 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 376%3B Fungi - 14%3B Plants - 230%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).Chr2-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi2g51770No description available.Bd2+View
Bradi1g15486No description available.Bd1+View
Bradi1g24610No description available.Bd1+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU2308G0012No description available.NW_011550974.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC02G0034Secretory carrier-associated membrane protein 1chr9-View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB07G24650Uncharacterized protein7-View
OB03G33000Uncharacterized protein3-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os03g38590secretory carrier-associated membrane protein 4, putative, expressedChr3-View
LOC_Os07g37740secretory carrier-associated membrane protein, putative, expressedChr7-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0714586200.01protein_codingChr7-View
OsR498G0102099700.01protein_codingChr1+View
OsR498G0306453400.01protein_codingChr3-View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_24545Similar to SCAMP4: Secretory carrier-associated membrane protein 4 (Oryza sativa subsp. japonica)Oropetium_genomic_20141112_073-View
Oropetium_20150105_16536Similar to SCAMP1: Putative secretory carrier-associated membrane protein 1 (Oryza sativa subsp. indica)Oropetium_genomic_20141112_036-View
Oropetium_20150105_12718Similar to SCAMP2: Secretory carrier-associated membrane protein 2 (Oryza sativa subsp. japonica)Oropetium_genomic_20141112_035+View

Phyllostachys edulis

Gene id Description Chromosome Strand Multiplicon
PH01000198G0020secretory carrier-associated membrane protein, putative, expressedPH01000198+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.019G104000secretory carrier membrane protein (SCAMP) family protein; [ co-ortholog (1of2) of At2g20840, ]Chr19+View
Potri.004G036600No description available.Chr04-View
Potri.013G144700secretory carrier membrane protein (SCAMP) family protein; [ co-ortholog (2of2) of At2g20840, ]Chr13+View
Potri.011G045100similar to similarity to SCAMP37. [ORG:Pisum sativum]; [ co-ortholog (1of2) of At1g11180, At1g61250, AAC82326, ]Chr11-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.003G316850No description available.Chr03+View
Sobic.002G340700similar to Secretory carrier-associated membrane protein 1Chr02-View
Sobic.001G180800No description available.Chr01+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.2G354100No description available.scaffold_2-View
Seita.5G340200No description available.scaffold_5+View
Seita.9G179700No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc07g054490.2Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMPSL2.50ch07-View
Solyc10g008550.2Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMPSL2.50ch10+View
Solyc02g078840.2Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMPSL2.50ch02+View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo8G0015700Secretory carrier membrane proteinpseudo8-View
Spipo14G0058200Secretory carrier membrane proteinpseudo14-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01030566001No description available.chr12+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d006605Secretory carrier-associated membrane protein Secretory carrier-associated membrane protein 32-View
Zm00001d013787Secretory carrier-associated membrane protein Secretory carrier-associated membrane protein 35-View
Zm00001d021805Secretory carrier-associated membrane protein Secretory carrier-associated membrane protein 37-View
Zm00001d033090Secretory carrier-associated membrane protein Secretory carrier-associated membrane protein 31-View


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Gene id
Species
Description
Chromosome
Strand