Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc08g008490.2WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, regionSL2.50ch08-View


Orthologs (inter-species colinear regions)

Ananas comosus

Gene id Description Chromosome Strand Multiplicon
Aco015585WD repeat-containing proteinLG03+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G42010Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G64610.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5+View
AT5G24320Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G53500.1)%3B Has 26833 Blast hits to 16918 proteins in 673 species: Archae - 62%3B Bacteria - 5430%3B Metazoa - 9873%3B Fungi - 5372%3B Plants - 2902%3B Viruses - 3%3B Other Eukaryotes - 3191 (source: NCBI BLink).Chr5-View
AT1G64610Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G42010.1)%3B Has 30640 Blast hits to 19025 proteins in 661 species: Archae - 60%3B Bacteria - 4919%3B Metazoa - 11746%3B Fungi - 6735%3B Plants - 3556%3B Viruses - 0%3B Other Eukaryotes - 3624 (source: NCBI BLink). Transducin/WD40 repeat-like superfamily proteinChr1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi1g77510protein kinase C binding (Blast2GO)Bd1-View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU0139G0324No description available.NC_026003.1-View
EGU0206G1724No description available.NC_025996.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC10G0859No description available.chr11-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os03g02440WD repeat-containing protein 44, putative, expressedChr3+View
LOC_Os04g48010WD-40 repeat family protein, putative, expressedChr4+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0305118700.01protein_codingChr3+View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_21362Similar to WDR44: WD repeat-containing protein 44 (Bos taurus)Oropetium_genomic_20141112_090+View
Oropetium_20150105_01415Similar to SPAC3H5.08c: Uncharacterized WD repeat-containing protein C3H5.08c (Schizosaccharomyces pombe (strain 972 / ATCC 24843))Oropetium_genomic_20141112_002+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.012G018200WD-40 repeat family protein; similar to G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) (Homo sapiens); [ co-ortholog (2of2) of At5g53500, ]Chr12-View
Potri.015G009700WD-40 repeat family protein; similar to G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) (Homo sapiens); [ co-ortholog (1of2) of At5g53500, ]Chr15+View
Potri.002G174100No description available.Chr02-View
Potri.003G144400No description available.Chr03-View
Potri.001G086600No description available.Chr01+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.001G532700similar to Expressed proteinChr01-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.9G568600No description available.scaffold_9-View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo1G0100600WD-repeat protein, putativepseudo1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01038588001No description available.chr16+View
GSVIVG01019618001No description available.chr2-View
GSVIVG01027183001No description available.chr15+View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00002.1.g16940.1.sm.mkhcNo description available.Zjn_sc00002.1-View
Zjn_sc00003.1.g14820.1.sm.mkhcNo description available.Zjn_sc00003.1-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d027351Signal transducer1+View


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Description
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Strand