PLAZA 4.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: Solyc06g068020.1
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
Solyc03g116490.1	Os05g0176300 protein (Fragment) (AHRD V1 -- C7J2W8_ORYSJ)	SL2.50ch03	+	View

Orthologs (inter-species colinear regions)

Ananas comosus

Gene id	Description	Chromosome	Strand	Multiplicon
Aco000463	hypothetical protein	LG12	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G15400	hypothetical protein unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1)%3B Has 82 Blast hits to 82 proteins in 16 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).	Chr1	-	View
AT1G80180	unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 10 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15400.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). hypothetical protein Encodes a substrate of the MAPK kinases. Phenotypic analyses of Arabidopsis expressing phosphorylation site mutant forms of At1g80180.1 showed clustered stomata and higher stomatal index in cotyledons expressing the phosphomimetic form of At1g80180.1.	Chr1	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
Bradi2g04597	No description available.	Bd2	-	View

Elaeis guineensis

Gene id	Description	Chromosome	Strand	Multiplicon
EGU2441G1408	No description available.	NC_025993.1	-	View
EGU0935G0324	No description available.	NC_025995.1	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MAC12G0534	No description available.	chr2	+	View

Oryza brachyantha

Gene id	Description	Chromosome	Strand	Multiplicon
OB01G14610	Uncharacterized protein	1	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
LOC_Os01g07890	expressed protein	Chr1	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OsR498G0100247800.01	protein_coding	Chr1	-	View

Phyllostachys edulis

Gene id	Description	Chromosome	Strand	Multiplicon
PH01000124G0860	expressed_protein	PH01000124	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
Potri.003G062200	No description available.	Chr03	+	View
Potri.001G172100	similar to expressed protein in Arabidopsis thaliana; [ co-ortholog (2of2) of At1g15400, At1g80180, ]	Chr01	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
Sobic.003G049300	similar to Putative uncharacterized protein	Chr03	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
Seita.1G043700	No description available.	scaffold_1	+	View
Seita.5G123000	No description available.	scaffold_5	-	View
Seita.4G224300	No description available.	scaffold_4	-	View

Zoysia japonica ssp. nagirizaki

Gene id	Description	Chromosome	Strand	Multiplicon
Zjn_sc00011.1.g05710.1.am.mk	No description available.	Zjn_sc00011.1	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
Zm00001d015742	No description available.	5	+	View
Zm00001d039657	No description available.	3	+	View