Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Potri.003G181100similar to CCR4-NOT transcription complex protein; putative; similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex; similar to subunit 7 (CCR4-associated factor 1; similar to (CAF1) (Mus musculus); similar to CCR4-NOT transcription complex protein;Chr03+View
Potri.001G046700No description available.Chr01-View
Potri.018G020900No description available.Chr18+View


Orthologs (inter-species colinear regions)

Ananas comosus

Gene id Description Chromosome Strand Multiplicon
Aco016920CCR4-NOT transcription complex subunitLG02+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G80780Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 910 Blast hits to 900 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 149%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink). Polynucleotidyl transferase, ribonuclease H-like superfamily proteinChr1+View
AT5G10960Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT1G80780.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi4g303303'-5'-exoribonuclease activity (Blast2GO)Bd4+View
Bradi3g541103'-5'-exoribonuclease activity (Blast2GO)Bd3-View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU1496G0074No description available.NW_011550907.1+View
EGU0881G1215No description available.NC_026000.1-View
EGU0881G0542No description available.NC_026000.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC02G2039No description available.chr9-View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB08G23580Uncharacterized protein8+View
OB09G16910Uncharacterized protein9+View
OB02G42680Uncharacterized protein2+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os08g34170CAF1 family ribonuclease containing protein, putative, expressedChr8+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0204933900.01protein_codingChr2+View
OsR498G0917457300.01protein_codingChr9+View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_04504Similar to CAF1-7: Probable CCR4-associated factor 1 homolog 7 (Arabidopsis thaliana)Oropetium_genomic_20141112_012+View

Phalaenopsis equestris

Gene id Description Chromosome Strand Multiplicon
PEQU_04610No description available.Scaffold000224-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.002G202400similar to Putative uncharacterized proteinChr02+View
Sobic.004G330700similar to Os02g0796300 proteinChr04+View
Sobic.007G140500similar to Putative uncharacterized proteinChr07+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.1G351100No description available.scaffold_1+View
Seita.6G162700No description available.scaffold_6+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc06g068410.2CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1SL2.50ch06-View
Solyc03g117030.1CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1SL2.50ch03+View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo5G0012100CCR4-NOT transcription complex subunit 7pseudo5+View
Spipo12G0043800CCR4-NOT transcription complex subunit 7pseudo12-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d020486CCR4-NOT transcription complex subunit 7 Probable CCR4-associated factor 1 homolog 117+View

Zostera marina

Gene id Description Chromosome Strand Multiplicon
Zosma69g00100CCR4-NOT transcription complex subunit 7scaffold_69+View


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Gene id
Species
Description
Chromosome
Strand