Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Potri.006G262500No description available.Chr06-View
Potri.003G181100similar to CCR4-NOT transcription complex protein; putative; similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex; similar to subunit 7 (CCR4-associated factor 1; similar to (CAF1) (Mus musculus); similar to CCR4-NOT transcription complex protein;Chr03+View
Potri.006G187200No description available.Chr06+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G80780Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 910 Blast hits to 900 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 149%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink). Polynucleotidyl transferase, ribonuclease H-like superfamily proteinChr1+View
AT1G15920Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 915 Blast hits to 901 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 151%3B Plants - 388%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink).Chr1+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi4g303303'-5'-exoribonuclease activity (Blast2GO)Bd4+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU1496G0074No description available.NW_011550907.1+View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB09G16910Uncharacterized protein9+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os08g34170CAF1 family ribonuclease containing protein, putative, expressedChr8+View
LOC_Os09g24990CAF1 family ribonuclease containing protein, putative, expressedChr9+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0917457300.01protein_codingChr9+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.002G202400similar to Putative uncharacterized proteinChr02+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.2G205600No description available.scaffold_2+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc06g068410.2CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1SL2.50ch06-View
Solyc03g117030.1CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1SL2.50ch03+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01035897001No description available.chr4-View
GSVIVG01023595001No description available.chr11-View


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Gene id
Species
Description
Chromosome
Strand