Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G02310proteolysis 6 Encodes PROTEOLYSIS6 (PRT6)%2C a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1%2C At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening%2C seedling sugar sensitivity%2C seedling lipid breakdown%2C and abscisic acid (ABA) sensitivity of germination. proteolysis 6 (PRT6)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C N-recognin%2C metazoa (InterPro:IPR013993)%2C Zinc finger%2C N-recognin (InterPro:IPR003126)%3B Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 939%3B Fungi - 577%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 277 (source: NCBI BLink).Chr5+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR0559G162No description available.AmTr_v1.0_scaffold00012-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi2g03180ubiquitin-protein ligase activity (Blast2GO)Bd2+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU2028G0858No description available.NC_026006.1-View
EGU2621G0905No description available.NC_025997.1+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC06G0315zinc finger protein, putative, expressedchr6+View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB01G13120proteolysis 61+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os01g05500zinc finger protein, putative, expressedChr1+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0100173700.01protein_codingChr1+View

Phyllostachys edulis

Gene id Description Chromosome Strand Multiplicon
PH01000015G2590zinc finger protein, putative, expressedPH01000015+View

Phalaenopsis equestris

Gene id Description Chromosome Strand Multiplicon
PEQU_18062No description available.Scaffold000277+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.006G085700No description available.Chr06-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.003G072200similar to Os01g0148000 proteinChr03-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.5G102700No description available.scaffold_5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc09g010830.2Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoaSL2.50ch09-View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo23G0017300E3 ubiquitin-protein ligase ubr1pseudo23+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01034169001No description available.chr8-View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00011.1.g04390.1.sm.mkhcNo description available.Zjn_sc00011.1+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d039860E3 ubiquitin-protein ligase PRT63-View


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Gene id
Species
Description
Chromosome
Strand