Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_12202Similar to SF3: Pollen-specific protein SF3 (Helianthus annuus)Oropetium_genomic_20141112_029-View


Orthologs (inter-species colinear regions)

Ananas comosus

Gene id Description Chromosome Strand Multiplicon
Aco016297LIM domain containing protein LIM transcription factorLG03-View
Aco007620LIM domain-containing proteinLG08+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G61230GATA type zinc finger transcription factor family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1)%3B Has 5500 Blast hits to 3584 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4540%3B Fungi - 25%3B Plants - 547%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink). Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. GATA type zinc finger transcription factor family proteinChr3-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi3g49950No description available.Bd3-View
Bradi5g16666No description available.Bd5-View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU0455G0011No description available.NW_011550953.1+View

Hordeum vulgare

Gene id Description Chromosome Strand Multiplicon
HVU0037G3217Predicted protein; Uncharacterized protein2-View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB04G26780Uncharacterized protein4-View
OB02G32940Uncharacterized protein2-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os04g45010OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressedChr4-View
LOC_Os02g42820OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressedChr2-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0204401000.01protein_codingChr2-View
OsR498G0408958800.01protein_codingChr4-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.004G303700similar to Putative uncharacterized proteinChr04+View
Sobic.006G159000similar to OSIGBa0125M19.14 proteinChr06-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.1G250500No description available.scaffold_1-View
Seita.7G179500No description available.scaffold_7-View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00022.1.g07600.1.am.mkNo description available.Zjn_sc00022.1+View
Zjn_sc00004.1.g05410.1.am.mkNo description available.Zjn_sc00004.1-View
Zjn_sc00056.1.g03320.1.am.mkNo description available.Zjn_sc00056.1-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d051262Putative LIM-type zinc finger domain family protein LIM domain-containing protein PLIM2b4-View
Zm00001d025926LIM transcription factor LIM domain-containing protein PLIM2b10-View
Zm00001d002844LIM domain-containing protein PLIM2b2+View
Zm00001d017382LIM domain-containing protein PLIM2b5-View


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Gene id
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Description
Chromosome
Strand