PLAZA 4.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: EGU0206G1236
Organism: Elaeis guineensis

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
EGU0139G0122	No description available.	NC_026003.1	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G61250	myb domain protein 17 (MYB17)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1)%3B Has 8810 Blast hits to 8210 proteins in 476 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 695%3B Fungi - 480%3B Plants - 5869%3B Viruses - 3%3B Other Eukaryotes - 1763 (source: NCBI BLink). myb domain protein 17 LATE MERISTEM IDENTITY2 (LMI2) is a target of the meristem identity regulator LEAFY (LFY). Has a role in the meristem identity transition from vegetative growth to flowering. Member of the R2R3 factor gene family.	Chr3	+	View
AT1G08810	myb domain protein 60 (MYB60)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2)%3B Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 784%3B Fungi - 468%3B Plants - 5803%3B Viruses - 7%3B Other Eukaryotes - 1764 (source: NCBI BLink). myb domain protein 60 putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light%2C abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA%2C desiccation%2C darkness)%2C with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.	Chr1	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OsR498G0816581200.01	protein_coding	Chr8	-	View

Phalaenopsis equestris

Gene id	Description	Chromosome	Strand	Multiplicon
PEQU_14547	No description available.	Scaffold000413	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
Potri.014G081200	No description available.	Chr14	+	View
Potri.003G144200	No description available.	Chr03	-	View
Potri.001G086700	No description available.	Chr01	+	View
Potri.002G173900	No description available.	Chr02	-	View
Potri.012G140500	No description available.	Chr12	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
Solyc03g025870.2	MYB transcription factor (AHRD V1 *- Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor	SL2.50ch03	-	View
Solyc08g082890.2	MYB transcription factor (AHRD V1 **-- D0VYJ9_DIOKA); contains Interpro domain(s) IPR015495 Myb transcription factor	SL2.50ch08	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
GSVIVG01028984001	No description available.	chr16	+	View
GSVIVG01027182001	No description available.	chr15	+	View
GSVIVG01019615001	No description available.	chr2	-	View