PLAZA 4.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: EGU0139G0190
Organism: Elaeis guineensis

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Ananas comosus

Gene id	Description	Chromosome	Strand	Multiplicon
Aco012950	myb domain protein 93	LG03	-	View
Aco013173	myb domain protein 3	LG24	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G02940	myb domain protein 107 (MYB107)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 9 (TAIR:AT5G16770.2)%3B Has 9059 Blast hits to 8356 proteins in 507 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 783%3B Fungi - 490%3B Plants - 6000%3B Viruses - 3%3B Other Eukaryotes - 1783 (source: NCBI BLink). Encodes a putative transcription factor (MYB107). myb domain protein 107	Chr3	+	View
AT4G17785	myb domain protein 39 (MYB39)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 9 (TAIR:AT5G16770.2)%3B Has 8868 Blast hits to 8222 proteins in 473 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 774%3B Fungi - 431%3B Plants - 5960%3B Viruses - 6%3B Other Eukaryotes - 1697 (source: NCBI BLink). Encodes a putative transcription factor (MYB39). myb domain protein 39	Chr4	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
Bradi5g20051	No description available.	Bd5	-	View
Bradi3g52260	MYB transcrition factor	Bd3	-	View

Hordeum vulgare

Gene id	Description	Chromosome	Strand	Multiplicon
HVU0042G0321	Uncharacterized protein	6	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MAC05G1653	No description available.	chr5	+	View
MAC10G1635	No description available.	chr11	-	View
MAC05G0466	No description available.	chr5	+	View
MAC09G2049	No description available.	chr4	+	View
MAC09G3233	No description available.	chr4	+	View
MAC10G2495	No description available.	chr11	+	View
MAC01G0617	No description available.	chrUn_random	+	View

Oryza brachyantha

Gene id	Description	Chromosome	Strand	Multiplicon
OB04G30520	Uncharacterized protein	4	-	View
OB02G35920	Uncharacterized protein	2	-	View
OB06G10740	Uncharacterized protein	6	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
LOC_Os04g50680	MYB family transcription factor, putative, expressed	Chr4	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OsR498G0409198400.01	protein_coding	Chr4	-	View

Oropetium thomaeum

Gene id	Description	Chromosome	Strand	Multiplicon
Oropetium_20150105_01549	Similar to MYB39: Transcription factor MYB39 (Arabidopsis thaliana)	Oropetium_genomic_20141112_002	-	View

Phyllostachys edulis

Gene id	Description	Chromosome	Strand	Multiplicon
PH01000030G0050	MYB family transcription factor, putative, expressed	PH01000030	+	View

Phalaenopsis equestris

Gene id	Description	Chromosome	Strand	Multiplicon
PEQU_05903	No description available.	Scaffold000107	+	View
PEQU_07503	No description available.	Scaffold000202	+	View
PEQU_22029	No description available.	Scaffold000703	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
Potri.003G094200	No description available.	Chr03	-	View
Potri.019G050900	No description available.	Chr19	+	View
Potri.001G139900	No description available.	Chr01	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
Sobic.006G198700	No description available.	Chr06	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
Seita.7G219700	No description available.	scaffold_7	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
Solyc08g076700.1	MYB transcription factor (AHRD V1 **** Q6R054_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor	SL2.50ch08	-	View
Solyc07g053230.2	Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor	SL2.50ch07	+	View

Spirodela polyrhiza

Gene id	Description	Chromosome	Strand	Multiplicon
Spipo11G0010200	Myb domain protein 9	pseudo11	-	View
Spipo5G0065300	Myb domain protein 9	pseudo5	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
GSVIVG01013126001	No description available.	chr2	-	View
GSVIVG01033670001	No description available.	chr8	-	View
GSVIVG01024353001	No description available.	chr16	-	View

Zoysia japonica ssp. nagirizaki

Gene id	Description	Chromosome	Strand	Multiplicon
Zjn_sc00022.1.g04650.1.sm.mk	No description available.	Zjn_sc00022.1	+	View
Zjn_sc00023.1.g01790.1.am.mkhc	No description available.	Zjn_sc00023.1	-	View
Zjn_sc00004.1.g08810.1.sm.mkhc	No description available.	Zjn_sc00004.1	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
Zm00001d002476	myb domain protein 58	2	+	View
Zm00001d051520	Putative MYB DNA-binding domain superfamily protein Myb-related protein Zm1	4	-	View
Zm00001d026197	Transcription factor MYB2 MYB transcription factor9	10	-	View