Anchorpoints

Gene id
Aco018122
Organism
Ananas comosus

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Aco021652ROP guanine nucleotide exchange factor 5LG16-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G79860RHO guanyl-nucleotide exchange factor 12 (ROPGEF12)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1)%3B Has 305 Blast hits to 303 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 305%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth. RHO guanyl-nucleotide exchange factor 12Chr1-View
AT3G16130RHO guanyl-nucleotide exchange factor 13 (ROPGEF13)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1)%3B Has 315 Blast hits to 313 proteins in 20 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 3%3B Fungi - 0%3B Plants - 304%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink). RHO guanyl-nucleotide exchange factor 13 Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily.Chr3+View
AT1G52240RHO guanyl-nucleotide exchange factor 11 (ROPGEF11)%3B CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger%2C PRONE (InterPro:IPR005512)%2C Dynein light chain%2C type 1/2 (InterPro:IPR001372)%3B BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 13 (TAIR:AT3G16130.1)%3B Has 1099 Blast hits to 1098 proteins in 168 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 490%3B Fungi - 40%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 82 (source: NCBI BLink). Encodes a member of KPP-like gene family%2C homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family%2C containing the novel PRONE domain (plant-specific Rop nucleotide exchanger)%2C which is exclusively active towards members of the Rop subfamily . rop guanine nucleotide exchange factor-like proteinChr1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR0315G166No description available.AmTr_v1.0_scaffold00109+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi2g16800Rho guanyl-nucleotide exchange factor activity (Blast2GO)Bd2+View
Bradi2g50490Rho guanyl-nucleotide exchange factor activity (Blast2GO)Bd2+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU1136G0928No description available.NC_025999.1+View
EGU1876G0248No description available.NC_025998.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC12G2111Rop guanine nucleotide exchange factor 1chr2+View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB01G35420Uncharacterized protein1+View
OB01G40610Uncharacterized protein1+View
OB05G33130Uncharacterized protein5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os01g48410ATROPGEF7/ROPGEF7, putative, expressedChr1+View
LOC_Os05g48640ATROPGEF7/ROPGEF7, putative, expressedChr5-View
LOC_Os01g55520ATROPGEF7/ROPGEF7, putative, expressedChr1+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G0102039300.01protein_codingChr1+View
OsR498G0101748500.01protein_codingChr1+View
OsR498G0511333400.01protein_codingChr5-View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_12586Similar to ROPGEF9: Rop guanine nucleotide exchange factor 9 (Arabidopsis thaliana)Oropetium_genomic_20141112_035+View
Oropetium_20150105_11624Similar to ROPGEF12: Rop guanine nucleotide exchange factor 12 (Arabidopsis thaliana)Oropetium_genomic_20141112_026-View
Oropetium_20150105_03911Similar to ROPGEF9: Rop guanine nucleotide exchange factor 9 (Arabidopsis thaliana)Oropetium_genomic_20141112_010+View

Phyllostachys edulis

Gene id Description Chromosome Strand Multiplicon
PH01000778G0760ATROPGEF7/ROPGEF7, putative, expressedPH01000778+View
PH01000018G2540ATROPGEF7/ROPGEF7, putative, expressedPH01000018+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.018G082400No description available.Chr18+View
Potri.003G052600No description available.Chr03-View
Potri.001G183800No description available.Chr01+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.009G229900similar to Putative uncharacterized protein OJ1115_B06.4Chr09-View
Sobic.003G303200similar to P0460E08.18 proteinChr03+View
Sobic.003G254200No description available.Chr03+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.5G325900No description available.scaffold_5+View
Seita.3G148800No description available.scaffold_3+View
Seita.5G268000No description available.scaffold_5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc03g120650.2Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONESL2.50ch03-View
Solyc12g044270.1Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONESL2.50ch12-View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo26G0004000Rop guanine nucleotide exchange factorpseudo26-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01015369001No description available.chr11-View
GSVIVG01017070001No description available.chr9+View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00040.1.g00530.1.sm.mkNo description available.Zjn_sc00040.1+View
Zjn_sc00009.1.g11240.1.am.mkNo description available.Zjn_sc00009.1-View
Zjn_sc00029.1.g01850.1.am.mkNo description available.Zjn_sc00029.1+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d038989Rop guanine nucleotide exchange factor 96-View
Zm00001d043383Rop guanine nucleotide exchange factor 93-View
Zm00001d043889Rop guanine nucleotide exchange factor 93-View
Zm00001d012691Rop guanine nucleotide exchange factor 98-View


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Gene id
Species
Description
Chromosome
Strand