Anchorpoints

Gene id
Aco012479
Organism
Ananas comosus

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G11130Clathrin%2C heavy chain%3B FUNCTIONS IN: structural molecule activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: male gametophyte%2C guard cell%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Clathrin%2C heavy chain (InterPro:IPR016341)%2C Clathrin%2C heavy chain%2C linker/propeller domain (InterPro:IPR016025)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Clathrin%2C heavy chain%2C propeller%2C N-terminal (InterPro:IPR001473)%2C Clathrin%2C heavy chain%2C linker%2C core motif (InterPro:IPR015348)%2C Clathrin%2C heavy chain%2C propeller repeat (InterPro:IPR022365)%2C Armadillo-type fold (InterPro:IPR016024)%2C Clathrin%2C heavy chain/VPS%2C 7-fold repeat (InterPro:IPR000547)%3B BEST Arabidopsis thaliana protein match is: Clathrin%2C heavy chain (TAIR:AT3G08530.1)%3B Has 1621 Blast hits to 1503 proteins in 495 species: Archae - 0%3B Bacteria - 35%3B Metazoa - 935%3B Fungi - 178%3B Plants - 133%3B Viruses - 0%3B Other Eukaryotes - 340 (source: NCBI BLink). Clathrin, heavy chainChr3-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi4g44977No description available.Bd4-View
Bradi4g26877No description available.Bd4+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU2621G0706No description available.NC_025997.1+View
EGU2621G0782No description available.NC_025997.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC05G0510Clathrin heavy chain 1chr5+View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB12G10310Uncharacterized protein12+View
OB11G10110Uncharacterized protein11+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os12g01390clathrin heavy chain, putative, expressedChr12+View
LOC_Os11g01380clathrin heavy chain, putative, expressedChr11+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G1220795500.01protein_codingChr12+View
OsR498G1119287500.01protein_codingChr11+View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_22204Similar to Os11g0104900: Clathrin heavy chain 1 (Oryza sativa subsp. japonica)Oropetium_genomic_20141112_085-View
Oropetium_20150105_25915Similar to Os11g0104900: Clathrin heavy chain 1 (Oryza sativa subsp. japonica)Oropetium_genomic_20141112_127-View

Phalaenopsis equestris

Gene id Description Chromosome Strand Multiplicon
PEQU_13765No description available.Scaffold000030+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.008G070600similar to clathrin heavy chain; putative; similar to Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) (Homo sapiens); [ co-ortholog (2of2) of At3g08530, At3g11130, ]Chr08+View
Potri.010G186900similar to clathrin heavy chain; putative; similar to Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) (Homo sapiens); [ co-ortholog (1of2) of At3g08530, At3g11130, ]Chr10-View
Potri.001G278800No description available.Chr01+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.005G003300No description available.Chr05+View
Sobic.008G003700No description available.Chr08+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.7G333500No description available.scaffold_7+View
Seita.8G020100No description available.scaffold_8-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc05g052510.2Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chainSL2.50ch05-View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo22G0031500Clathrin heavy chain, putativepseudo22-View
Spipo23G0037500Clathrin heavy chain, putativepseudo23+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01032792001No description available.chr13+View
GSVIVG01024708001No description available.chr6+View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00028.1.g04420.1.sm.mkhcNo description available.Zjn_sc00028.1-View
Zjn_sc00031.1.g00160.1.am.mkhcNo description available.Zjn_sc00031.1+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d005090Clathrin heavy chain Clathrin heavy chain 22-View
Zm00001d052308Clathrin heavy chain Clathrin heavy chain 24+View

Zostera marina

Gene id Description Chromosome Strand Multiplicon
Zosma114g00800Clathrin heavy chain, putativescaffold_114+View


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