Anchorpoints

Gene id
Aco012477
Organism
Ananas comosus

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Aco011060TRICHOME BIREFRINGENCE-LIKE 45LG04-View
Aco007058TRICHOME BIREFRINGENCE-LIKE 28LG23+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G01360trichome birefringence-like protein (DUF828) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication). TRICHOME BIREFRINGENCE-LIKE 3 (TBL3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).Chr5-View
AT2G30010TRICHOME BIREFRINGENCE-LIKE 45 (TBL45)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G58600.1)%3B Has 1337 Blast hits to 1318 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1337%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). TRICHOME BIREFRINGENCE-LIKE 45 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).Chr2+View
AT3G55990ESKIMO 1 (ESK1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to freezing%2C positive regulation of transcription%2C response to cold%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: stem%2C fruit%2C root%2C flower%2C leaf%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1)%3B Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 1334%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication). trichome birefringence-like protein (DUF828)Chr3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi2g54010No description available.Bd2+View
Bradi1g65530No description available.Bd1-View
Bradi1g03940No description available.Bd1+View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
EGU2028G0107No description available.NC_026006.1+View
EGU2621G1615No description available.NC_025997.1+View
EGU2621G0283No description available.NC_025997.1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MAC06G1008leaf senescence related protein, putative, expressedchr6+View
MAC05G0274leaf senescence related protein, putative, expressedchr5+View
MAC05G2984expressed proteinchr5-View
MAC10G2381expressed proteinchr11+View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB03G45760No description available.3-View
OB12G10300Uncharacterized protein12+View
OB01G44780Uncharacterized protein1+View
OB11G10100Uncharacterized protein11+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os01g61460leaf senescence related protein, putative, expressedChr1+View
LOC_Os03g60300expressed proteinChr3-View
LOC_Os03g18110proteins of unknown function domain containing protein, putative, expressedChr3+View
LOC_Os05g39350PMR5, putative, expressedChr5-View
LOC_Os12g01380proteins of unknown function domain containing protein, expressedChr12+View
LOC_Os11g01370PMR5, putative, expressedChr11+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G1220795300.01protein_codingChr12+View
OsR498G0102265100.01protein_codingChr1+View
OsR498G0511019800.01protein_codingChr5-View
OsR498G0307277400.01protein_codingChr3-View
OsR498G1119287100.01protein_codingChr11+View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_25905Similar to TBL34: Protein trichome birefringence-like 34 (Arabidopsis thaliana)Oropetium_genomic_20141112_127-View
Oropetium_20150105_18773Similar to ESK1: Protein ESKIMO 1 (Arabidopsis thaliana)Oropetium_genomic_20141112_055+View
Oropetium_20150105_23744Similar to TBL33: Protein trichome birefringence-like 33 (Arabidopsis thaliana)Oropetium_genomic_20141112_100+View
Oropetium_20150105_00999Similar to TBL38: Protein trichome birefringence-like 38 (Arabidopsis thaliana)Oropetium_genomic_20141112_001+View
Oropetium_20150105_22192Similar to TBL34: Protein trichome birefringence-like 34 (Arabidopsis thaliana)Oropetium_genomic_20141112_085-View

Phyllostachys edulis

Gene id Description Chromosome Strand Multiplicon
PH01000262G0700PMR5, putative, expressedPH01000262+View
PH01000433G0980proteins of unknown function domain containing protein, expressedPH01000433-View

Phalaenopsis equestris

Gene id Description Chromosome Strand Multiplicon
PEQU_10573No description available.Scaffold000223-View
PEQU_11959No description available.Scaffold000226+View
PEQU_08776No description available.Scaffold000511+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.008G069900similar to expressed protein in Arabidopsis thaliana; [ ortholog of At2g40150,At3g55990,]Chr08+View
Potri.010G187300No description available.Chr10-View
Potri.016G125500similar to expressed protein in Arabidopsis thaliana; [ ortholog of At2g38320,]Chr16+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.008G003600similar to Expressed proteinChr08+View
Sobic.005G004800similar to Expressed proteinChr05+View
Sobic.001G038200similar to Putative uncharacterized proteinChr01+View
Sobic.003G344200similar to Lustrin A-likeChr03+View
Sobic.001G406700similar to Os03g0291800 proteinChr01-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.9G440600No description available.scaffold_9-View
Seita.2G443000No description available.scaffold_2-View
Seita.5G368200No description available.scaffold_5+View
Seita.9G036900No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc06g082070.2Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plantSL2.50ch06+View
Solyc06g007170.2Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plantSL2.50ch06+View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo6G0062700Protein trichome birefringence-like 33pseudo6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01032800001No description available.chr13+View
GSVIVG01011180001No description available.chr8+View
GSVIVG01024714001No description available.chr6+View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00013.1.g08340.1.am.mkNo description available.Zjn_sc00013.1-View
Zjn_sc00014.1.g08410.1.sm.mkhcNo description available.Zjn_sc00014.1-View
Zjn_sc00040.1.g04230.1.am.mkNo description available.Zjn_sc00040.1+View
Zjn_sc00009.1.g07740.1.sm.mkhcNo description available.Zjn_sc00009.1-View
Zjn_sc00002.1.g05140.1.am.mkNo description available.Zjn_sc00002.1-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
Zm00001d028751Protein ESKIMO 11+View
Zm00001d012983Protein trichome birefringence-like 345-View
Zm00001d034620Protein trichome birefringence-like 321+View
Zm00001d042993Protein ESKIMO 13-View
Zm00001d005092Protein ESKIMO 12-View

Zostera marina

Gene id Description Chromosome Strand Multiplicon
Zosma193g00100No description available.scaffold_193-View


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Gene id
Species
Description
Chromosome
Strand