PLAZA 4.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT2G35860
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G06390	FASCICLIN-like arabinogalactan protein 17 precursor FASCICLIN-like arabinogalactan protein 17 precursor (FLA17)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: cell adhesion%3B LOCATED IN: vacuole%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782)%3B BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 18 precursor (TAIR:AT3G11700.1)%3B Has 803 Blast hits to 777 proteins in 229 species: Archae - 10%3B Bacteria - 420%3B Metazoa - 40%3B Fungi - 21%3B Plants - 196%3B Viruses - 1%3B Other Eukaryotes - 115 (source: NCBI BLink).	Chr5	+	View
AT3G52370	FASCICLIN-like arabinogalactan protein 15 precursor (FLA15)%3B INVOLVED IN: cell adhesion%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782)%3B BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 16 precursor (TAIR:AT2G35860.1)%3B Has 1194 Blast hits to 1139 proteins in 270 species: Archae - 8%3B Bacteria - 524%3B Metazoa - 184%3B Fungi - 15%3B Plants - 237%3B Viruses - 3%3B Other Eukaryotes - 223 (source: NCBI BLink). FASCICLIN-like arabinogalactan protein 15 precursor	Chr3	+	View

Orthologs (inter-species colinear regions)

Oryza brachyantha

Gene id	Description	Chromosome	Strand	Multiplicon
OB03G43700	No description available.	3	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
LOC_Os03g57460	fasciclin domain containing protein, expressed	Chr3	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OsR498G0307177200.01	protein_coding	Chr3	-	View

Oropetium thomaeum

Gene id	Description	Chromosome	Strand	Multiplicon
Oropetium_20150105_07810	Similar to FLA16: Fasciclin-like arabinogalactan protein 16 (Arabidopsis thaliana)	Oropetium_genomic_20141112_018	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
Potri.006G200300	similar to hypothetical protein; [ co-ortholog (1of2) of At3g11700, At5g06390, At5g05650, ]	Chr06	+	View
Potri.010G244900	No description available.	Chr10	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
Sobic.002G039700	similar to GPI-anchored protein-like	Chr02	-	View
Sobic.001G063500	similar to Expressed protein	Chr01	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
Seita.9G062600	No description available.	scaffold_9	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
Solyc10g081720.1	Fasciclin-like arabinogalactan protein 14 (AHRD V1 ***- A9XTL9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain	SL2.50ch10	+	View

Zoysia japonica ssp. nagirizaki

Gene id	Description	Chromosome	Strand	Multiplicon
Zjn_sc00013.1.g06570.1.es.mkhc	No description available.	Zjn_sc00013.1	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
Zm00001d034373	No description available.	1	-	View

Zostera marina

Gene id	Description	Chromosome	Strand	Multiplicon
Zosma116g00360	Fasciclin-like arabinogalactan protein 17	scaffold_116	-	View