Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
Zm00001d012994
(Zea mays)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Zea mays | Orthologous gene family | Zm00001d012994 Zm00001d035846 | 2 |  |
| Tree-based ortholog | Zm00001d012994 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | Zm00001d035846 Zm00001d012994 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR0751G172 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR0751G172 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR0751G172 | 1 | ||
| Ananas comosus | Orthologous gene family | many-to-1 | Aco012217 | 1 | |
| Tree-based ortholog | 1-to-1 | Aco012217 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Aco012217 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT2G47430 | 1 | |
| Tree-based ortholog | 1-to-1 | AT2G47430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G47430 | 1 | ||
| Brachypodium distachyon | Orthologous gene family | many-to-many | Bradi1g34519 Bradi1g47393 | 2 | |
| Tree-based ortholog | 1-to-many | Bradi1g34519 Bradi1g47393 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Bradi1g34519 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | Cre02.g074150 Cre07.g329900 Cre17.g733150 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Cre13.g571200 | 1 | ||
| Elaeis guineensis | Orthologous gene family | many-to-many | EGU1634G0138 EGU2621G0590 | 2 | |
| Tree-based ortholog | 1-to-many | EGU1634G0138 EGU2621G0590 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | EGU2621G0590 EGU1634G0138 | 2 | ||
| Hordeum vulgare | Orthologous gene family | many-to-1 | HVU0045G3203 | 1 | |
| Tree-based ortholog | 1-to-1 | HVU0045G3203 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HVU0045G3203 | 1 | ||
| Marchantia polymorpha | Orthologous gene family | many-to-1 | Mapoly0075s0036 | 1 | |
| Tree-based ortholog | 1-to-1 | Mapoly0075s0036 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Mapoly0075s0036 | 1 | ||
| Micromonas commoda | Tree-based ortholog | 1-to-many | MCO04G164 MCO03G349 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MCO14G487 | 1 | ||
| Musa acuminata | Orthologous gene family | many-to-many | MAC07G0097 MAC07G2110 | 2 | |
| Tree-based ortholog | 1-to-1 | MAC07G0097 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MAC07G0097 | 1 | ||
| Oropetium thomaeum | Orthologous gene family | many-to-1 | Oropetium_20150105_17317 | 1 | |
| Tree-based ortholog | 1-to-1 | Oropetium_20150105_17317 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Oropetium_20150105_17317 | 1 | ||
| Oryza brachyantha | Orthologous gene family | many-to-1 | OB06G14940 | 1 | |
| Tree-based ortholog | 1-to-1 | OB06G14940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OB06G14940 | 1 | ||
| Oryza sativa ssp. indica | Orthologous gene family | many-to-1 | OsR498G0611732400.01 | 1 | |
| Tree-based ortholog | 1-to-1 | OsR498G0611732400.01 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OsR498G0611732400.01 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | LOC_Os06g08450 | 1 | |
| Tree-based ortholog | 1-to-1 | LOC_Os06g08450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LOC_Os06g08450 | 1 | ||
| Phalaenopsis equestris | Orthologous gene family | many-to-1 | PEQU_15822 | 1 | |
| Tree-based ortholog | 1-to-1 | PEQU_15822 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PEQU_15822 | 1 | ||
| Phyllostachys edulis | Orthologous gene family | many-to-many | PH01001590G0260 PH01001590G0270 PH01002110G0100 ... | 4 | |
| Tree-based ortholog | 1-to-many | PH01002585G0080 PH01001590G0260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PH01002585G0080 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-1 | Pp3c5_3920 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | Pp3c21_21550 Pp3c2_16310 Pp3c18_2110 ... | 5 | ||
| Picea abies | Orthologous gene family | many-to-many | PAB00036165 PAB00066384 | 2 | |
| Tree-based ortholog | 1-to-1 | PAB00036165 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PAB00036165 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | Potri.008G191100 Potri.013G009700 Potri.014G121500 ... | 4 | |
| Tree-based ortholog | 1-to-many | Potri.013G009700 Potri.014G121600 Potri.014G121500 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | Potri.008G191100 Potri.014G121600 Potri.014G121500 | 3 | ||
| Selaginella moellendorffii | Orthologous gene family | many-to-1 | SMO201G0156 | 1 | |
| Tree-based ortholog | 1-to-1 | SMO165G0107 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SMO139G0100 | 1 | ||
| Setaria italica | Orthologous gene family | many-to-many | Seita.4G050600 Seita.9G234100 | 2 | |
| Tree-based ortholog | 1-to-1 | Seita.4G050600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Seita.4G050600 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | Solyc02g083670.2 Solyc12g099670.1 Solyc12g099720.1 | 3 | |
| Tree-based ortholog | 1-to-1 | Solyc12g099720.1 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Solyc12g099720.1 | 1 | ||
| Sorghum bicolor | Orthologous gene family | many-to-many | Sobic.001G230600 Sobic.006G046300 Sobic.010G064800 | 3 | |
| Tree-based ortholog | 1-to-1 | Sobic.006G046300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Sobic.010G064800 | 1 | ||
| Spirodela polyrhiza | Orthologous gene family | many-to-1 | Spipo5G0032000 | 1 | |
| Tree-based ortholog | 1-to-1 | Spipo5G0032000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Spipo5G0032000 | 1 | ||
| Triticum aestivum | Orthologous gene family | many-to-many | TAE15035G001 TAE25676G002 TAE36223G001 ... | 7 | |
| Tree-based ortholog | 1-to-many | TAE36223G001 TAE38543G001 TAE54801G006 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | TAE25676G002 TAE15035G001 TAE57560G001 | 3 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | GSVIVG01028113001 | 1 | |
| Tree-based ortholog | 1-to-1 | GSVIVG01028113001 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GSVIVG01028113001 | 1 | ||
| Zostera marina | Orthologous gene family | many-to-1 | Zosma24g01500 | 1 | |
| Tree-based ortholog | 1-to-1 | Zosma24g01500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Zosma24g01500 | 1 | ||
| Zoysia japonica ssp. nagirizaki | Orthologous gene family | many-to-many | Zjn_sc00004.1.g01830.1.sm.mkhc Zjn_sc00004.1.g01840.1.sm.mk Zjn_sc00049.1.g02060.1.am.mk | 3 | |
| Tree-based ortholog | 1-to-1 | Zjn_sc00049.1.g02060.1.am.mk | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | Zjn_sc00049.1.g02060.1.am.mk | 1 |