Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
Solyc10g005750.2
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | Solyc09g092020.2 Solyc10g005750.2 | 2 |  |
| Tree-based ortholog | Solyc10g005750.2 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | Solyc10g005750.2 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR0751G041 ATR1145G044 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR0751G041 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR0751G041 | 1 | ||
| Ananas comosus | Orthologous gene family | many-to-1 | Aco017084 | 1 | |
| Tree-based ortholog | 1-to-1 | Aco017084 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Aco017084 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G24110 AT4G26470 | 2 | |
| Tree-based ortholog | 1-to-1 | AT4G26470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT4G26470 | 1 | ||
| Anchor point | N/A | AT4G26470 | 1 | ||
| Brachypodium distachyon | Orthologous gene family | many-to-many | Bradi1g36230 Bradi2g36187 Bradi3g07230 | 3 | |
| Tree-based ortholog | 1-to-many | Bradi3g07230 Bradi1g36230 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Bradi3g07230 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-many | Cre03.g202600 Cre06.g306750 | 2 | |
| Tree-based ortholog | 1-to-many | Cre06.g306750 Cre03.g202600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Cre06.g306750 | 1 | ||
| Elaeis guineensis | Orthologous gene family | many-to-many | EGU0881G0591 EGU1685G1942 EGU1982G0001 | 3 | |
| Tree-based ortholog | 1-to-1 | EGU1685G1942 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EGU0881G0591 | 1 | ||
| Anchor point | N/A | EGU1685G1942 | 1 | ||
| Hordeum vulgare | Orthologous gene family | many-to-many | HVU0036G1788 HVU0042G2688 HVU0045G2202 | 3 | |
| Tree-based ortholog | 1-to-many | HVU0042G2688 HVU0045G2202 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HVU0045G2202 | 1 | ||
| Marchantia polymorpha | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | Mapoly0001s0559 Mapoly0045s0020 Mapoly0045s0017 ... | 5 | |
| Micromonas commoda | Orthologous gene family | many-to-1 | MCO01G702 | 1 | |
| Tree-based ortholog | 1-to-1 | MCO01G702 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MCO01G702 | 1 | ||
| Musa acuminata | Orthologous gene family | many-to-many | MAC03G1551 MAC06G2430 | 2 | |
| Tree-based ortholog | 1-to-1 | MAC03G1551 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MAC03G1551 | 1 | ||
| Oropetium thomaeum | Orthologous gene family | many-to-many | Oropetium_20150105_15525 Oropetium_20150105_17469 Oropetium_20150105_18499 | 3 | |
| Tree-based ortholog | 1-to-many | Oropetium_20150105_18499 Oropetium_20150105_17469 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Oropetium_20150105_17469 | 1 | ||
| Oryza brachyantha | Orthologous gene family | many-to-many | OB02G16770 OB05G13090 OB06G28550 | 3 | |
| Tree-based ortholog | 1-to-many | OB02G16770 OB06G28550 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OB06G28550 | 1 | ||
| Oryza sativa ssp. indica | Orthologous gene family | many-to-many | OsR498G0203158500.01 OsR498G0509733200.01 OsR498G0612919800.01 | 3 | |
| Tree-based ortholog | 1-to-1 | OsR498G0203158500.01 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OsR498G0612919800.01 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | LOC_Os02g10470 LOC_Os05g05460 LOC_Os06g40720 | 3 | |
| Tree-based ortholog | 1-to-many | LOC_Os02g10470 LOC_Os06g40720 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LOC_Os06g40720 | 1 | ||
| Phalaenopsis equestris | Orthologous gene family | many-to-1 | PEQU_24484 | 1 | |
| Tree-based ortholog | 1-to-1 | PEQU_24484 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PEQU_24484 | 1 | ||
| Phyllostachys edulis | Orthologous gene family | many-to-many | PH01000180G0660 PH01001467G0430 PH01001556G0340 | 3 | |
| Tree-based ortholog | 1-to-1 | PH01001467G0430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PH01001467G0430 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | Pp3c16_16010 Pp3c6_22110 | 2 | |
| Tree-based ortholog | 1-to-many | Pp3c6_22110 Pp3c16_16010 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | Pp3c6_22110 Pp3c16_16010 | 2 | ||
| Picea abies | Orthologous gene family | many-to-many | PAB00015743 PAB00031575 | 2 | |
| Tree-based ortholog | 1-to-1 | PAB00015743 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PAB00015743 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | Potri.001G314900 Potri.001G471100 Potri.017G054901 | 3 | |
| Tree-based ortholog | 1-to-1 | Potri.001G471100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Potri.001G471100 | 1 | ||
| Anchor point | N/A | Potri.001G471100 | 1 | ||
| Selaginella moellendorffii | Orthologous gene family | many-to-many | SMO232G0027 SMO301G0027 | 2 | |
| Tree-based ortholog | 1-to-many | SMO301G0027 SMO232G0027 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SMO232G0027 | 1 | ||
| Setaria italica | Orthologous gene family | many-to-many | Seita.1G048000 Seita.3G039700 Seita.4G219700 | 3 | |
| Tree-based ortholog | 1-to-many | Seita.1G048000 Seita.4G219700 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Seita.4G219700 | 1 | ||
| Sorghum bicolor | Orthologous gene family | many-to-many | Sobic.004G080800 Sobic.006G010800 Sobic.010G188800 | 3 | |
| Tree-based ortholog | 1-to-many | Sobic.004G080800 Sobic.010G188800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Sobic.010G188800 | 1 | ||
| Spirodela polyrhiza | Orthologous gene family | many-to-1 | Spipo5G0019000 | 1 | |
| Tree-based ortholog | 1-to-1 | Spipo5G0019000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Spipo5G0019000 | 1 | ||
| Triticum aestivum | Orthologous gene family | many-to-many | TAE05095G002 TAE13582G001 TAE24371G003 ... | 9 | |
| Tree-based ortholog | 1-to-many | TAE41048G001 TAE48330G003 TAE05095G002 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TAE24371G003 TAE13582G001 | 2 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | GSVIVG01014761001 GSVIVG01021071001 | 2 | |
| Tree-based ortholog | 1-to-1 | GSVIVG01014761001 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GSVIVG01014761001 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | Zm00001d000256 Zm00001d004480 Zm00001d046792 ... | 4 | |
| Tree-based ortholog | 1-to-many | Zm00001d053659 Zm00001d000256 Zm00001d046792 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zm00001d046792 | 1 | ||
| Zostera marina | Orthologous gene family | many-to-many | Zosma101g00770 Zosma221g00150 | 2 | |
| Tree-based ortholog | 1-to-1 | Zosma221g00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zosma221g00150 | 1 | ||
| Zoysia japonica ssp. nagirizaki | Orthologous gene family | many-to-many | Zjn_sc00016.1.g04380.1.am.mk Zjn_sc00045.1.g01390.1.sm.mk Zjn_sc00086.1.g01800.1.sm.mk | 3 | |
| Tree-based ortholog | 1-to-1 | Zjn_sc00045.1.g01390.1.sm.mk | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zjn_sc00045.1.g01390.1.sm.mk | 1 |