Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
Seita.9G171300
(Setaria italica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Setaria italica | Orthologous gene family | Seita.1G150900 Seita.2G332700 Seita.9G171300 | 3 |  |
| Tree-based ortholog | Seita.9G171300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | Seita.9G171300 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR0661G530 ATR1101G040 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR0661G530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR0661G530 | 1 | ||
| Ananas comosus | Orthologous gene family | many-to-many | Aco002944 Aco004891 | 2 | |
| Tree-based ortholog | 1-to-1 | Aco004891 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Aco004891 | 1 | ||
| Anchor point | N/A | Aco004891 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT2G14910 AT5G14970 | 2 | |
| Tree-based ortholog | 1-to-1 | AT2G14910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G14910 | 1 | ||
| Brachypodium distachyon | Orthologous gene family | many-to-many | Bradi1g14830 Bradi4g03477 | 2 | |
| Tree-based ortholog | 1-to-1 | Bradi1g14830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Bradi1g14830 | 1 | ||
| Anchor point | N/A | Bradi1g14830 Bradi4g03477 | 2 | ||
| Elaeis guineensis | Orthologous gene family | many-to-many | EGU1685G0832 EGU2441G1653 | 2 | |
| Tree-based ortholog | 1-to-1 | EGU2441G1653 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EGU2441G1653 | 1 | ||
| Hordeum vulgare | Orthologous gene family | many-to-many | HVU0040G0961 HVU0041G0923 | 2 | |
| Tree-based ortholog | 1-to-1 | HVU0040G0961 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HVU0040G0961 | 1 | ||
| Marchantia polymorpha | Orthologous gene family | many-to-many | Mapoly0040s0014 Mapoly0216s0009 | 2 | |
| Tree-based ortholog | 1-to-many | Mapoly0216s0009 Mapoly0040s0014 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | Mapoly0216s0009 Mapoly0040s0014 | 2 | ||
| Musa acuminata | Orthologous gene family | many-to-many | MAC02G2798 MAC05G0065 MAC09G0577 | 3 | |
| Tree-based ortholog | 1-to-many | MAC02G2798 MAC05G0065 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MAC02G2798 | 1 | ||
| Anchor point | N/A | MAC09G0577 | 1 | ||
| Oropetium thomaeum | Orthologous gene family | many-to-1 | Oropetium_20150105_08484 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Oropetium_20150105_08484 | 1 | ||
| Anchor point | N/A | Oropetium_20150105_08484 | 1 | ||
| Oryza brachyantha | Orthologous gene family | many-to-many | OB03G33890 OB12G23950 | 2 | |
| Tree-based ortholog | 1-to-1 | OB03G33890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OB03G33890 | 1 | ||
| Anchor point | N/A | OB03G33890 OB12G23950 | 2 | ||
| Oryza sativa ssp. indica | Orthologous gene family | many-to-many | OsR498G0306532100.01 OsR498G1221950700.01 | 2 | |
| Tree-based ortholog | 1-to-1 | OsR498G0306532100.01 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OsR498G0306532100.01 | 1 | ||
| Anchor point | N/A | OsR498G0306532100.01 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | LOC_Os03g41080 LOC_Os12g39200 | 2 | |
| Tree-based ortholog | 1-to-1 | LOC_Os03g41080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LOC_Os03g41080 | 1 | ||
| Anchor point | N/A | LOC_Os12g39200 LOC_Os03g41080 | 2 | ||
| Phalaenopsis equestris | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PEQU_18356 | 1 | |
| Phyllostachys edulis | Orthologous gene family | many-to-many | PH01000108G0470 PH01001307G0060 PH01001873G0020 | 3 | |
| Tree-based ortholog | 1-to-many | PH01000108G0470 PH01001307G0060 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PH01001873G0020 | 1 | ||
| Anchor point | N/A | PH01000108G0470 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | Pp3c11_22560 Pp3c7_4160 Pp3c7_4165 | 3 | |
| Picea abies | Orthologous gene family | many-to-many | PAB00009137 PAB00031264 PAB00049277 | 3 | |
| Tree-based ortholog | 1-to-1 | PAB00009137 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PAB00009137 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | Potri.001G298200 Potri.009G092800 | 2 | |
| Tree-based ortholog | 1-to-many | Potri.001G298200 Potri.009G092800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | Potri.001G298200 Potri.009G092800 | 2 | ||
| Selaginella moellendorffii | Orthologous gene family | many-to-1 | SMO119G0192 | 1 | |
| Tree-based ortholog | 1-to-1 | SMO119G0192 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SMO119G0192 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | Solyc01g107380.2 Solyc02g087340.2 | 2 | |
| Tree-based ortholog | 1-to-1 | Solyc01g107380.2 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Solyc01g107380.2 | 1 | ||
| Sorghum bicolor | Orthologous gene family | many-to-1 | Sobic.001G169900 | 1 | |
| Tree-based ortholog | 1-to-1 | Sobic.001G169900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Sobic.001G169900 | 1 | ||
| Anchor point | N/A | Sobic.001G169900 | 1 | ||
| Spirodela polyrhiza | Orthologous gene family | many-to-many | Spipo25G0009700 Spipo2G0094300 | 2 | |
| Tree-based ortholog | 1-to-1 | Spipo25G0009700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Spipo2G0094300 | 1 | ||
| Triticum aestivum | Orthologous gene family | many-to-many | TAE01363G001 TAE14054G001 TAE41893G001 ... | 6 | |
| Tree-based ortholog | 1-to-many | TAE14054G001 TAE51285G001 TAE41893G001 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TAE14054G001 TAE51285G001 | 2 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | GSVIVG01032582001 GSVIVG01037889001 | 2 | |
| Tree-based ortholog | 1-to-1 | GSVIVG01037889001 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GSVIVG01037889001 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | Zm00001d013745 Zm00001d033366 | 2 | |
| Tree-based ortholog | 1-to-many | Zm00001d013745 Zm00001d033366 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zm00001d013745 | 1 | ||
| Anchor point | N/A | Zm00001d033366 Zm00001d013745 | 2 | ||
| Zostera marina | Orthologous gene family | many-to-1 | Zosma303g00150 | 1 | |
| Tree-based ortholog | 1-to-1 | Zosma303g00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zosma303g00150 | 1 | ||
| Zoysia japonica ssp. nagirizaki | Orthologous gene family | many-to-many | Zjn_sc00019.1.g01700.1.sm.mkhc Zjn_sc00046.1.g00250.1.am.mkhc Zjn_sc00046.1.g00260.1.am.mk | 3 | |
| Tree-based ortholog | 1-to-1 | Zjn_sc00019.1.g01700.1.sm.mkhc | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | Zjn_sc00019.1.g01700.1.sm.mkhc | 1 | ||
| Anchor point | N/A | Zjn_sc00019.1.g01700.1.sm.mkhc Zjn_sc00046.1.g00250.1.am.mkhc | 2 |