Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO04M004552
- Gene count gene family
- 45
- Total coding gene count
- 983,459
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Brachypodium distachyon | 34,310 | 1 | 3.49% | 2.22% | 0.64 |
| Hordeum vulgare | 24,282 | 1 | 2.47% | 2.22% | 0.9 |
| Triticum aestivum | 103,537 | 3 | 10.53% | 6.67% | 0.63 |
| Phyllostachys edulis | 31,987 | 2 | 3.25% | 4.44% | 1.37 |
| Oryza brachyantha | 32,037 | 1 | 3.26% | 2.22% | 0.68 |
| Oryza sativa ssp. japonica | 42,189 | 1 | 4.29% | 2.22% | 0.52 |
| Oryza sativa ssp. indica | 38,714 | 1 | 3.94% | 2.22% | 0.56 |
| Oropetium thomaeum | 28,446 | 1 | 2.89% | 2.22% | 0.77 |
| Zoysia japonica ssp. nagirizaki | 53,625 | 1 | 5.45% | 2.22% | 0.41 |
| Setaria italica | 34,584 | 2 | 3.52% | 4.44% | 1.26 |
| Sorghum bicolor | 34,211 | 1 | 3.48% | 2.22% | 0.64 |
| Zea mays | 39,498 | 11 | 4.02% | 24.44% | 6.08 |
| Ananas comosus | 27,024 | 1 | 2.75% | 2.22% | 0.81 |
| Musa acuminata | 36,528 | 2 | 3.71% | 4.44% | 1.2 |
| Elaeis guineensis | 25,487 | 1 | 2.59% | 2.22% | 0.86 |
| Phalaenopsis equestris | 29,431 | 1 | 2.99% | 2.22% | 0.74 |
| Spirodela polyrhiza | 19,623 | 1 | 2% | 2.22% | 1.11 |
| Zostera marina | 20,450 | 1 | 2.08% | 2.22% | 1.07 |
| Arabidopsis thaliana | 27,655 | 1 | 2.81% | 2.22% | 0.79 |
| Populus trichocarpa | 42,950 | 1 | 4.37% | 2.22% | 0.51 |
| Vitis vinifera | 26,346 | 1 | 2.68% | 2.22% | 0.83 |
| Solanum lycopersicum | 34,725 | 1 | 3.53% | 2.22% | 0.63 |
| Amborella trichopoda | 26,846 | 1 | 2.73% | 2.22% | 0.81 |
| Picea abies | 66,632 | 2 | 6.78% | 4.44% | 0.65 |
| Selaginella moellendorffii | 22,285 | 1 | 2.27% | 2.22% | 0.98 |
| Marchantia polymorpha | 19,287 | 1 | 1.96% | 2.22% | 1.13 |
| Physcomitrella patens | 32,926 | 1 | 3.35% | 2.22% | 0.66 |
| Chlamydomonas reinhardtii | 17,741 | 1 | 1.8% | 2.22% | 1.23 |
| Micromonas commoda | 10,103 | 1 | 1.03% | 2.22% | 2.16 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Triticeae | 2 | 127,819 | 4 | 13% | 8.89% | 0.68 |
| Pooideae | 3 | 162,129 | 5 | 16.49% | 11.11% | 0.67 |
| OryzaSativa | 2 | 80,903 | 2 | 8.23% | 4.44% | 0.54 |
| Oryza | 3 | 112,940 | 3 | 11.48% | 6.67% | 0.58 |
| BOP_clade | 7 | 307,056 | 10 | 31.22% | 22.22% | 0.71 |
| Chloridoideae | 2 | 82,071 | 2 | 8.35% | 4.44% | 0.53 |
| Andropogoneae | 2 | 73,709 | 12 | 7.49% | 26.67% | 3.56 |
| Panicoideae | 3 | 108,293 | 14 | 11.01% | 31.11% | 2.83 |
| PACMAD_clade | 5 | 190,364 | 16 | 19.36% | 35.56% | 1.84 |
| Poaceae | 12 | 497,420 | 26 | 50.58% | 57.78% | 1.14 |
| Poales | 13 | 524,444 | 27 | 53.33% | 60% | 1.13 |
| Commelinids | 15 | 586,459 | 30 | 59.63% | 66.67% | 1.12 |
| Petrosaviidae | 16 | 615,890 | 31 | 62.62% | 68.89% | 1.1 |
| Alismatales | 2 | 40,073 | 2 | 4.07% | 4.44% | 1.09 |
| Liliopsida | 18 | 655,963 | 33 | 66.7% | 73.33% | 1.1 |
| Rosids1 | 2 | 70,605 | 2 | 7.18% | 4.44% | 0.62 |
| Rosids | 3 | 96,951 | 3 | 9.86% | 6.67% | 0.68 |
| Pentapetalae | 4 | 131,676 | 4 | 13.39% | 8.89% | 0.66 |
| Mesangiospermae | 22 | 787,639 | 37 | 80.09% | 82.22% | 1.03 |
| Magnoliophyta | 23 | 814,485 | 38 | 82.82% | 84.44% | 1.02 |
| Spermatophyta | 24 | 881,117 | 40 | 89.59% | 88.89% | 0.99 |
| Tracheophyta | 25 | 903,402 | 41 | 91.86% | 91.11% | 0.99 |
| Embryophyta | 27 | 955,615 | 43 | 97.17% | 95.56% | 0.98 |
| Chlorophyta | 2 | 27,844 | 2 | 2.83% | 4.44% | 1.57 |
| Viridiplantae | 29 | 983,459 | 45 | 100% | 100% | 1 |