Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04M000167
- Gene count gene family
- 542
- Total coding gene count
- 983,459
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Brachypodium distachyon | 34,310 | 23 | 3.49% | 4.24% | 1.21 |
| Hordeum vulgare | 24,282 | 22 | 2.47% | 4.06% | 1.64 |
| Triticum aestivum | 103,537 | 101 | 10.53% | 18.63% | 1.77 |
| Phyllostachys edulis | 31,987 | 32 | 3.25% | 5.9% | 1.82 |
| Oryza brachyantha | 32,037 | 30 | 3.26% | 5.54% | 1.7 |
| Oryza sativa ssp. japonica | 42,189 | 32 | 4.29% | 5.9% | 1.38 |
| Oryza sativa ssp. indica | 38,714 | 29 | 3.94% | 5.35% | 1.36 |
| Oropetium thomaeum | 28,446 | 25 | 2.89% | 4.61% | 1.6 |
| Zoysia japonica ssp. nagirizaki | 53,625 | 46 | 5.45% | 8.49% | 1.56 |
| Setaria italica | 34,584 | 40 | 3.52% | 7.38% | 2.1 |
| Sorghum bicolor | 34,211 | 28 | 3.48% | 5.17% | 1.49 |
| Zea mays | 39,498 | 35 | 4.02% | 6.46% | 1.61 |
| Ananas comosus | 27,024 | 7 | 2.75% | 1.29% | 0.47 |
| Musa acuminata | 36,528 | 16 | 3.71% | 2.95% | 0.8 |
| Elaeis guineensis | 25,487 | 14 | 2.59% | 2.58% | 1 |
| Phalaenopsis equestris | 29,431 | 8 | 2.99% | 1.48% | 0.49 |
| Spirodela polyrhiza | 19,623 | 4 | 2% | 0.74% | 0.37 |
| Zostera marina | 20,450 | 5 | 2.08% | 0.92% | 0.44 |
| Arabidopsis thaliana | 27,655 | 13 | 2.81% | 2.4% | 0.85 |
| Populus trichocarpa | 42,950 | 10 | 4.37% | 1.85% | 0.42 |
| Vitis vinifera | 26,346 | 6 | 2.68% | 1.11% | 0.41 |
| Solanum lycopersicum | 34,725 | 8 | 3.53% | 1.48% | 0.42 |
| Amborella trichopoda | 26,846 | 3 | 2.73% | 0.55% | 0.2 |
| Picea abies | 66,632 | 1 | 6.78% | 0.18% | 0.03 |
| Selaginella moellendorffii | 22,285 | 2 | 2.27% | 0.37% | 0.16 |
| Marchantia polymorpha | 19,287 | 2 | 1.96% | 0.37% | 0.19 |
| Physcomitrella patens | 32,926 | 0 | 3.35% | 0% | 0 |
| Chlamydomonas reinhardtii | 17,741 | 0 | 1.8% | 0% | 0 |
| Micromonas commoda | 10,103 | 0 | 1.03% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Triticeae | 2 | 127,819 | 123 | 13% | 22.69% | 1.75 |
| Pooideae | 3 | 162,129 | 146 | 16.49% | 26.94% | 1.63 |
| OryzaSativa | 2 | 80,903 | 61 | 8.23% | 11.25% | 1.37 |
| Oryza | 3 | 112,940 | 91 | 11.48% | 16.79% | 1.46 |
| BOP_clade | 7 | 307,056 | 269 | 31.22% | 49.63% | 1.59 |
| Chloridoideae | 2 | 82,071 | 71 | 8.35% | 13.1% | 1.57 |
| Andropogoneae | 2 | 73,709 | 63 | 7.49% | 11.62% | 1.55 |
| Panicoideae | 3 | 108,293 | 103 | 11.01% | 19% | 1.73 |
| PACMAD_clade | 5 | 190,364 | 174 | 19.36% | 32.1% | 1.66 |
| Poaceae | 12 | 497,420 | 443 | 50.58% | 81.73% | 1.62 |
| Poales | 13 | 524,444 | 450 | 53.33% | 83.03% | 1.56 |
| Commelinids | 15 | 586,459 | 480 | 59.63% | 88.56% | 1.49 |
| Petrosaviidae | 16 | 615,890 | 488 | 62.62% | 90.04% | 1.44 |
| Alismatales | 2 | 40,073 | 9 | 4.07% | 1.66% | 0.41 |
| Liliopsida | 18 | 655,963 | 497 | 66.7% | 91.7% | 1.37 |
| Rosids1 | 2 | 70,605 | 23 | 7.18% | 4.24% | 0.59 |
| Rosids | 3 | 96,951 | 29 | 9.86% | 5.35% | 0.54 |
| Pentapetalae | 4 | 131,676 | 37 | 13.39% | 6.83% | 0.51 |
| Mesangiospermae | 22 | 787,639 | 534 | 80.09% | 98.52% | 1.23 |
| Magnoliophyta | 23 | 814,485 | 537 | 82.82% | 99.08% | 1.2 |
| Spermatophyta | 24 | 881,117 | 538 | 89.59% | 99.26% | 1.11 |
| Tracheophyta | 25 | 903,402 | 540 | 91.86% | 99.63% | 1.08 |
| Embryophyta | 27 | 955,615 | 542 | 97.17% | 100% | 1.03 |
| Chlorophyta | 2 | 27,844 | 0 | 2.83% | 0% | 0 |
| Viridiplantae | 29 | 983,459 | 542 | 100% | 100% | 1 |