Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04M000166
- Gene count gene family
- 544
- Total coding gene count
- 983,459
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Brachypodium distachyon | 34,310 | 15 | 3.49% | 2.76% | 0.79 |
| Hordeum vulgare | 24,282 | 13 | 2.47% | 2.39% | 0.97 |
| Triticum aestivum | 103,537 | 72 | 10.53% | 13.24% | 1.26 |
| Phyllostachys edulis | 31,987 | 11 | 3.25% | 2.02% | 0.62 |
| Oryza brachyantha | 32,037 | 29 | 3.26% | 5.33% | 1.63 |
| Oryza sativa ssp. japonica | 42,189 | 39 | 4.29% | 7.17% | 1.67 |
| Oryza sativa ssp. indica | 38,714 | 19 | 3.94% | 3.49% | 0.89 |
| Oropetium thomaeum | 28,446 | 16 | 2.89% | 2.94% | 1.02 |
| Zoysia japonica ssp. nagirizaki | 53,625 | 20 | 5.45% | 3.68% | 0.68 |
| Setaria italica | 34,584 | 19 | 3.52% | 3.49% | 0.99 |
| Sorghum bicolor | 34,211 | 14 | 3.48% | 2.57% | 0.74 |
| Zea mays | 39,498 | 17 | 4.02% | 3.13% | 0.78 |
| Ananas comosus | 27,024 | 7 | 2.75% | 1.29% | 0.47 |
| Musa acuminata | 36,528 | 14 | 3.71% | 2.57% | 0.69 |
| Elaeis guineensis | 25,487 | 21 | 2.59% | 3.86% | 1.49 |
| Phalaenopsis equestris | 29,431 | 3 | 2.99% | 0.55% | 0.18 |
| Spirodela polyrhiza | 19,623 | 17 | 2% | 3.13% | 1.57 |
| Zostera marina | 20,450 | 12 | 2.08% | 2.21% | 1.06 |
| Arabidopsis thaliana | 27,655 | 22 | 2.81% | 4.04% | 1.44 |
| Populus trichocarpa | 42,950 | 19 | 4.37% | 3.49% | 0.8 |
| Vitis vinifera | 26,346 | 11 | 2.68% | 2.02% | 0.75 |
| Solanum lycopersicum | 34,725 | 20 | 3.53% | 3.68% | 1.04 |
| Amborella trichopoda | 26,846 | 16 | 2.73% | 2.94% | 1.08 |
| Picea abies | 66,632 | 26 | 6.78% | 4.78% | 0.71 |
| Selaginella moellendorffii | 22,285 | 12 | 2.27% | 2.21% | 0.97 |
| Marchantia polymorpha | 19,287 | 36 | 1.96% | 6.62% | 3.38 |
| Physcomitrella patens | 32,926 | 10 | 3.35% | 1.84% | 0.55 |
| Chlamydomonas reinhardtii | 17,741 | 14 | 1.8% | 2.57% | 1.43 |
| Micromonas commoda | 10,103 | 0 | 1.03% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Triticeae | 2 | 127,819 | 85 | 13% | 15.63% | 1.2 |
| Pooideae | 3 | 162,129 | 100 | 16.49% | 18.38% | 1.11 |
| OryzaSativa | 2 | 80,903 | 58 | 8.23% | 10.66% | 1.3 |
| Oryza | 3 | 112,940 | 87 | 11.48% | 15.99% | 1.39 |
| BOP_clade | 7 | 307,056 | 198 | 31.22% | 36.4% | 1.17 |
| Chloridoideae | 2 | 82,071 | 36 | 8.35% | 6.62% | 0.79 |
| Andropogoneae | 2 | 73,709 | 31 | 7.49% | 5.7% | 0.76 |
| Panicoideae | 3 | 108,293 | 50 | 11.01% | 9.19% | 0.83 |
| PACMAD_clade | 5 | 190,364 | 86 | 19.36% | 15.81% | 0.82 |
| Poaceae | 12 | 497,420 | 284 | 50.58% | 52.21% | 1.03 |
| Poales | 13 | 524,444 | 291 | 53.33% | 53.49% | 1 |
| Commelinids | 15 | 586,459 | 326 | 59.63% | 59.93% | 1.01 |
| Petrosaviidae | 16 | 615,890 | 329 | 62.62% | 60.48% | 0.97 |
| Alismatales | 2 | 40,073 | 29 | 4.07% | 5.33% | 1.31 |
| Liliopsida | 18 | 655,963 | 358 | 66.7% | 65.81% | 0.99 |
| Rosids1 | 2 | 70,605 | 41 | 7.18% | 7.54% | 1.05 |
| Rosids | 3 | 96,951 | 52 | 9.86% | 9.56% | 0.97 |
| Pentapetalae | 4 | 131,676 | 72 | 13.39% | 13.24% | 0.99 |
| Mesangiospermae | 22 | 787,639 | 430 | 80.09% | 79.04% | 0.99 |
| Magnoliophyta | 23 | 814,485 | 446 | 82.82% | 81.99% | 0.99 |
| Spermatophyta | 24 | 881,117 | 472 | 89.59% | 86.76% | 0.97 |
| Tracheophyta | 25 | 903,402 | 484 | 91.86% | 88.97% | 0.97 |
| Embryophyta | 27 | 955,615 | 530 | 97.17% | 97.43% | 1 |
| Chlorophyta | 2 | 27,844 | 14 | 2.83% | 2.57% | 0.91 |
| Viridiplantae | 29 | 983,459 | 544 | 100% | 100% | 1 |