Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04M000058
- Gene count gene family
- 1253
- Total coding gene count
- 983,459
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Brachypodium distachyon | 34,310 | 60 | 3.49% | 4.79% | 1.37 |
| Hordeum vulgare | 24,282 | 43 | 2.47% | 3.43% | 1.39 |
| Triticum aestivum | 103,537 | 182 | 10.53% | 14.53% | 1.38 |
| Phyllostachys edulis | 31,987 | 46 | 3.25% | 3.67% | 1.13 |
| Oryza brachyantha | 32,037 | 52 | 3.26% | 4.15% | 1.27 |
| Oryza sativa ssp. japonica | 42,189 | 72 | 4.29% | 5.75% | 1.34 |
| Oryza sativa ssp. indica | 38,714 | 50 | 3.94% | 3.99% | 1.01 |
| Oropetium thomaeum | 28,446 | 30 | 2.89% | 2.39% | 0.83 |
| Zoysia japonica ssp. nagirizaki | 53,625 | 49 | 5.45% | 3.91% | 0.72 |
| Setaria italica | 34,584 | 78 | 3.52% | 6.23% | 1.77 |
| Sorghum bicolor | 34,211 | 62 | 3.48% | 4.95% | 1.42 |
| Zea mays | 39,498 | 70 | 4.02% | 5.59% | 1.39 |
| Ananas comosus | 27,024 | 26 | 2.75% | 2.08% | 0.76 |
| Musa acuminata | 36,528 | 35 | 3.71% | 2.79% | 0.75 |
| Elaeis guineensis | 25,487 | 23 | 2.59% | 1.84% | 0.71 |
| Phalaenopsis equestris | 29,431 | 29 | 2.99% | 2.31% | 0.77 |
| Spirodela polyrhiza | 19,623 | 24 | 2% | 1.92% | 0.96 |
| Zostera marina | 20,450 | 15 | 2.08% | 1.2% | 0.58 |
| Arabidopsis thaliana | 27,655 | 21 | 2.81% | 1.68% | 0.6 |
| Populus trichocarpa | 42,950 | 65 | 4.37% | 5.19% | 1.19 |
| Vitis vinifera | 26,346 | 39 | 2.68% | 3.11% | 1.16 |
| Solanum lycopersicum | 34,725 | 40 | 3.53% | 3.19% | 0.9 |
| Amborella trichopoda | 26,846 | 17 | 2.73% | 1.36% | 0.5 |
| Picea abies | 66,632 | 78 | 6.78% | 6.23% | 0.92 |
| Selaginella moellendorffii | 22,285 | 23 | 2.27% | 1.84% | 0.81 |
| Marchantia polymorpha | 19,287 | 10 | 1.96% | 0.8% | 0.41 |
| Physcomitrella patens | 32,926 | 10 | 3.35% | 0.8% | 0.24 |
| Chlamydomonas reinhardtii | 17,741 | 1 | 1.8% | 0.08% | 0.04 |
| Micromonas commoda | 10,103 | 3 | 1.03% | 0.24% | 0.23 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Triticeae | 2 | 127,819 | 225 | 13% | 17.96% | 1.38 |
| Pooideae | 3 | 162,129 | 285 | 16.49% | 22.75% | 1.38 |
| OryzaSativa | 2 | 80,903 | 122 | 8.23% | 9.74% | 1.18 |
| Oryza | 3 | 112,940 | 174 | 11.48% | 13.89% | 1.21 |
| BOP_clade | 7 | 307,056 | 505 | 31.22% | 40.3% | 1.29 |
| Chloridoideae | 2 | 82,071 | 79 | 8.35% | 6.3% | 0.75 |
| Andropogoneae | 2 | 73,709 | 132 | 7.49% | 10.53% | 1.41 |
| Panicoideae | 3 | 108,293 | 210 | 11.01% | 16.76% | 1.52 |
| PACMAD_clade | 5 | 190,364 | 289 | 19.36% | 23.06% | 1.19 |
| Poaceae | 12 | 497,420 | 794 | 50.58% | 63.37% | 1.25 |
| Poales | 13 | 524,444 | 820 | 53.33% | 65.44% | 1.23 |
| Commelinids | 15 | 586,459 | 878 | 59.63% | 70.07% | 1.18 |
| Petrosaviidae | 16 | 615,890 | 907 | 62.62% | 72.39% | 1.16 |
| Alismatales | 2 | 40,073 | 39 | 4.07% | 3.11% | 0.76 |
| Liliopsida | 18 | 655,963 | 946 | 66.7% | 75.5% | 1.13 |
| Rosids1 | 2 | 70,605 | 86 | 7.18% | 6.86% | 0.96 |
| Rosids | 3 | 96,951 | 125 | 9.86% | 9.98% | 1.01 |
| Pentapetalae | 4 | 131,676 | 165 | 13.39% | 13.17% | 0.98 |
| Mesangiospermae | 22 | 787,639 | 1,111 | 80.09% | 88.67% | 1.11 |
| Magnoliophyta | 23 | 814,485 | 1,128 | 82.82% | 90.02% | 1.09 |
| Spermatophyta | 24 | 881,117 | 1,206 | 89.59% | 96.25% | 1.07 |
| Tracheophyta | 25 | 903,402 | 1,229 | 91.86% | 98.08% | 1.07 |
| Embryophyta | 27 | 955,615 | 1,249 | 97.17% | 99.68% | 1.03 |
| Chlorophyta | 2 | 27,844 | 4 | 2.83% | 0.32% | 0.11 |
| Viridiplantae | 29 | 983,459 | 1,253 | 100% | 100% | 1 |