Functional Clusters   top

Cluster information

Cluster identifier
CH_ath_500
Species
Arabidopsis thaliana
Chromosome
Chr5
E-value
0.000982773
Data type
GO
Data identifier
GO:0005874
Data description
microtubule

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM04M001572953129
HOM04M002345682124
HOM04M00013366817229
HOM04M0003633109128
HOM04M004667403122

Gene information

In cluster Gene id Description Gene type Gene family
V AT5G62240Cell cycle regulated microtubule associated protein%3B CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021)%3B BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT5G07170.1)%3B Has 217 Blast hits to 213 proteins in 53 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 89%3B Fungi - 1%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink).Coding geneHOM04M004667 orphan gene
V AT5G62250microtubule-associated protein 65-9 (MAP65-9)%3B CONTAINS InterPro DOMAIN/s: Microtubule-associated protein%2C MAP65/ASE1-type (InterPro:IPR007145)%3B BEST Arabidopsis thaliana protein match is: Microtubule associated protein (MAP65/ASE1) family protein (TAIR:AT5G51600.1)%3B Has 14792 Blast hits to 10558 proteins in 786 species: Archae - 349%3B Bacteria - 1217%3B Metazoa - 7703%3B Fungi - 921%3B Plants - 837%3B Viruses - 44%3B Other Eukaryotes - 3721 (source: NCBI BLink).Coding geneHOM04M000363 ORTHO04M000259
X AT5G62260AT hook motif DNA-binding family proteinCoding geneHOM04M000106 ORTHO04M000258
X AT5G62270FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1).Coding geneHOM04M002325 ORTHO04M002615
X AT5G00695novel transcribed regionRNA gene
X AT5G62280DUF1442 family protein (DUF1442)Coding geneHOM04M002384 ORTHO04M001699
X AT5G62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinCoding geneHOM04M003673 ORTHO04M003956
X AT5G62300Ribosomal protein S10p/S20e family proteinCoding geneHOM04M002141 ORTHO04M002432
X AT5G62310AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family proteinCoding geneHOM04M000078 ORTHO04M001602
X AT5G62320myb domain protein 99Coding geneHOM04M000010 ORTHO04M000002
X AT5G62330hypothetical proteinCoding geneHOM04M028959 orphan gene
X AT5G62340Plant invertase/pectin methylesterase inhibitor superfamily proteinCoding geneHOM04M028959 ORTHO04M000450
X AT5G09055No description available.RNA gene
X AT5G62350Plant invertase/pectin methylesterase inhibitor superfamily proteinCoding geneHOM04M000560 ORTHO04M000450
X AT5G62360Plant invertase/pectin methylesterase inhibitor superfamily proteinCoding geneHOM04M000560 ORTHO04M000450
X AT5G62370Tetratricopeptide repeat (TPR)-like superfamily proteinCoding geneHOM04M011961 ORTHO04M010148
X AT5G09060No description available.RNA gene
X AT5TE90130No description available.Transposon
X AT5TE90135No description available.Transposon
X AT5G62380NAC-domain protein 101Coding geneHOM04M000014 ORTHO04M000022
X AT5G62390BCL-2-associated athanogene 7Coding geneHOM04M003401 ORTHO04M004158
X AT5TE90145No description available.Transposon
X AT5G62400transmembrane proteinCoding geneHOM04M025319 orphan gene
X AT5G62410structural maintenance of chromosomes 2Coding geneHOM04M003473 ORTHO04M005406
X AT5G62420NAD(P)-linked oxidoreductase superfamily proteinCoding geneHOM04M000214 ORTHO04M000613
X AT5G09065No description available.RNA gene
X AT5G09070No description available.RNA gene
X AT5G62430cycling DOF factor 1 (CDF1)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C Dof-type (InterPro:IPR003851)%3B BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1)%3B Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1125%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).Coding geneHOM04M000093 ORTHO04M000040
X AT5G62440FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: nucleologenesis%2C regulation of cell division%2C embryo development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602)%3B Has 1122 Blast hits to 800 proteins in 144 species: Archae - 2%3B Bacteria - 150%3B Metazoa - 333%3B Fungi - 187%3B Plants - 279%3B Viruses - 3%3B Other Eukaryotes - 168 (source: NCBI BLink).Coding geneHOM04M003811 ORTHO04M004749
X AT5TE90220No description available.Transposon
X AT5G62460RING/FYVE/PHD zinc finger superfamily proteinCoding geneHOM04M000427 ORTHO04M000317
X AT5G62470myb domain protein 96Coding geneHOM04M000010 ORTHO04M000002
X AT5TE90240No description available.Transposon
X AT5G09080U2RNA gene
X AT5G62480glutathione S-transferase tau 9Coding geneHOM04M000069 ORTHO04M000020
X AT5G62490HVA22 homologue BCoding geneHOM04M000556 ORTHO04M000554
X AT5TE90280No description available.Transposon
V AT5G62500end binding protein 1BCoding geneHOM04M001572 ORTHO04M001766
X AT5G62510F-box family proteinCoding geneHOM04M001212 ORTHO04M001027
X AT5G62520similar to RCD one 5Coding geneHOM04M000748 ORTHO04M000587
X AT5G62530aldehyde dehydrogenase 12A1Coding geneHOM04M005198 ORTHO04M005735
X AT5G62540ubiquitin-conjugating enzyme 3 (UBC3)%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)%2C Ubiquitin-conjugating enzyme%2C E2 (InterPro:IPR000608)%3B BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM04M000061 ORTHO04M001590
X AT5G62550microtubule-associated futsch-like proteinCoding geneHOM04M006574 ORTHO04M008103
X AT5G62560RING/U-box superfamily protein with ARM repeat domain%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: PLANT U-BOX 39 (TAIR:AT3G47820.1)%3B Has 4205 Blast hits to 2838 proteins in 224 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 617%3B Fungi - 508%3B Plants - 2679%3B Viruses - 0%3B Other Eukaryotes - 389 (source: NCBI BLink).Coding geneHOM04M001847 ORTHO04M001856
X AT5G62573hypothetical proteinCoding geneorphan geneorphan gene
X AT5G62570Calmodulin binding protein-like proteinCoding geneHOM04M000281 ORTHO04M007741
X AT5G62575succinate dehydrogenase subunitCoding geneHOM04M006259 ORTHO04M007532
V AT5G62580ARM repeat superfamily proteinCoding geneHOM04M002345 ORTHO04M002773
X AT5G62600ARM repeat superfamily proteinCoding geneHOM04M003733 ORTHO04M004745
X AT5G62610basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM04M000054 ORTHO04M000090
X AT5G62620Galactosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C sugar binding%2C galactosyltransferase activity%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Galectin%2C carbohydrate recognition domain (InterPro:IPR001079)%2C Glycosyl transferase%2C family 31 (InterPro:IPR002659)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G74800.1)%3B Has 2311 Blast hits to 2276 proteins in 115 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 1663%3B Fungi - 8%3B Plants - 578%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).Coding geneHOM04M000430 ORTHO04M000340
X AT5G62623Putative membrane lipoproteinCoding geneHOM04M014971 orphan gene
X AT5TE90460No description available.Transposon
X AT5TE90465No description available.Transposon
X AT5G62627Putative membrane lipoproteinCoding geneHOM04M014971 orphan gene
X AT5G62630hipl2 protein precursor (HIPL2)%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to plasma membrane%2C plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose/sorbosone dehydrogenase (InterPro:IPR011041)%2C Folate receptor%2C conserved region (InterPro:IPR018143)%2C Six-bladed beta-propeller%2C TolB-like (InterPro:IPR011042)%3B BEST Arabidopsis thaliana protein match is: catalytics (TAIR:AT1G74790.1)%3B Has 3498 Blast hits to 3492 proteins in 823 species: Archae - 55%3B Bacteria - 1934%3B Metazoa - 143%3B Fungi - 4%3B Plants - 281%3B Viruses - 0%3B Other Eukaryotes - 1081 (source: NCBI BLink).Coding geneHOM04M001446 ORTHO04M002263
X AT5G62640proline-rich family proteinCoding geneHOM04M005351 ORTHO04M006438
X AT5G62650Tic22-like family proteinCoding geneHOM04M006217 ORTHO04M007971
X AT5G62660F-box and associated interaction domains-containing proteinCoding geneHOM04M001212 ORTHO04M001027
X AT5G09085No description available.RNA gene
X AT5G62670H -ATPase 11Coding geneHOM04M000263 ORTHO04M000254
X AT5G62680Major facilitator superfamily proteinCoding geneHOM04M000017 ORTHO04M000007
X AT5TE90570No description available.Transposon
X AT5TE90580No description available.Transposon
X AT5TE90585No description available.Transposon
V AT5G62690tubulin beta chain 2Coding geneHOM04M000133 ORTHO04M000286
V AT5G62700tubulin beta chain 3Coding geneHOM04M000133 ORTHO04M000286